Pairwise Alignments

Query, 336 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  162 bits (411), Expect = 8e-45
 Identities = 94/291 (32%), Positives = 155/291 (53%), Gaps = 5/291 (1%)

Query: 38  ILIFIANSLASPYFLNAWNLSDATFNFTEKAIIAFAMALLIIAGEIDLSVAAIIALASTA 97
           + + +  S  +P F    NL +     +  AIIA  M L+I+   IDLSV +++AL    
Sbjct: 39  LFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLALCGAF 98

Query: 98  MGAAVQMGVGTPGLVAIGIGTGLFCGAFNGFLVAGLKLPSIVVTIGTMSLFRGISYMVLG 157
               V M V     V   +  G   GA +G ++A  K+ + + T+ TM+L RG++ +   
Sbjct: 99  AATLVAMEVPVLVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTD 158

Query: 158 DQAYGKYPAD----FAYFGQGYVFWVISFEFVLFIVMAVLFAILLHATNFGRQVYVIGTN 213
            +       D    FA+FG GY   +    +++ +V A  + +L H T FGR VY +G N
Sbjct: 159 GRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGAWYLLNH-TRFGRYVYAVGGN 217

Query: 214 PFAARFSGIPVERVKFILFLLTGLMSGIAAVCLTSRLGSTRPSIAQGWELEVVTMVVLGG 273
             A R SGI V+RVK  ++ + GL++ +A + +TSRL S +P+   G+EL+ +  VVLGG
Sbjct: 218 ESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYELDAIAAVVLGG 277

Query: 274 VSILGGSGTIAGVVIAAFVMGLVTFGLGLLNVPGIVMSIFVGLLLIITIAI 324
            S++GG G I G +I A ++G +   L LL+V      I   +++++ + +
Sbjct: 278 TSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLV 328