Pairwise Alignments

Query, 333 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  185 bits (469), Expect = 2e-51
 Identities = 114/312 (36%), Positives = 176/312 (56%), Gaps = 12/312 (3%)

Query: 2   QRLLKNREWLL------AGIIIIMIAGFALRAPGFGRPGNLVNIFNDTSILIILALGQMA 55
           ++ L ++EWL+      A + ++++  F    P F    NL+NI   TS+  I+A+G   
Sbjct: 20  RKKLLSKEWLIEQKSLIALLFLVVVVSFL--NPNFFTVDNLLNILRQTSVNAIIAVGMTL 77

Query: 56  VILTKSIDLSVAANLAFTGMAVAMTNAAFPGVPLPLLIVMAVGIGAFLGSLNGILVWWLG 115
           VILT  IDLSV + LA  G A A T  A   VP+ + +  A+  GA LG+++GI++    
Sbjct: 78  VILTAGIDLSVGSVLALCG-AFAATLVAME-VPVLVAVPTALLAGAALGAISGIIIAKGK 135

Query: 116 IPPIVVTLGTLTIYRGMAFVLSGGGWVNAH--QFSPTFLNVPRTMILGMPVLSWVAILII 173
           +   + TL T+T+ RG+  V + G  ++      + TF        LG+PV  W+ +++ 
Sbjct: 136 VQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVVF 195

Query: 174 AGAWLVLTRTSFGRSAYASGGNPGAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYA 233
           AGAW +L  T FGR  YA GGN  A   +GI+V R +   + + G LA LA  +  SR +
Sbjct: 196 AGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLS 255

Query: 234 VAYVDIAAGFELDSVAANVIGGISIAGGIGSVAGAVLGALFLGVIKNALPVIGISPFAQM 293
            A      G+ELD++AA V+GG S+ GG G + G ++GAL +G + NAL ++ +S + QM
Sbjct: 256 SAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQM 315

Query: 294 AISGVVIVLAVV 305
               VVI+LAV+
Sbjct: 316 IAKAVVILLAVL 327