Pairwise Alignments

Query, 510 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

 Score =  396 bits (1018), Expect = e-115
 Identities = 206/490 (42%), Positives = 311/490 (63%), Gaps = 1/490 (0%)

Query: 19  VLEMRGISQIFPGVKALDGVDIALYPGKVTALIGENGAGKSTLVKILTGIYRPNEGEILL 78
           +L +  I + FPGVKALD   + +YPG+V AL+GENGAGKSTL+K+LTGIY  + G I  
Sbjct: 5   ILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEY 64

Query: 79  DGKAVHFHSAQDAIDAGVTAIHQETVLFDELSVGENIFLGHAPKGRFGLIDWKTINERAR 138
            G+ V F   +D+  AG++ IHQE  L  +L++ ENIFLG      FG I W  ++ +A 
Sbjct: 65  QGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRKAD 124

Query: 139 ILLEQLESTIDPTIRLKDLSIAQRHLVAIARALSVEARIVIMDEPTAALSRKEIDDLFRI 198
            LL +L         L +LS+ ++ +V IA+ALS E++++IMDEPT AL+  E + LF +
Sbjct: 125 QLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNV 184

Query: 199 VENLKRQGKAILFISHKFDEVYEIAENYAVFRDGKMVGAGTLATTPQDEIVRLMVGRDVT 258
           +  L+ QG  I++ISH+  E++EI ++  V RDGK +G   +  T +D ++ +MVGR + 
Sbjct: 185 INELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRKLE 244

Query: 259 NAFPKQAVTLGPTVLSVRDYSHQTEFRDISLDLRKGEILGLYGLIGAGRSELCQSLFGIT 318
             +P+ A   G   L V   +  +   D+S  L+KGEILG+ GL+GAGR+EL + ++G  
Sbjct: 245 EQYPRIAAQQGDISLEVIGLT-GSGVHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGAL 303

Query: 319 RPASGEVTLDGQPLTIRSPEDAIRAGIVYVPEERGRHGLALDMPIYQNMSLPSLTRTSRK 378
               G + L+G+ +   SP+D +  GI Y+ E+R   GL L + + +NMSL +L + S+ 
Sbjct: 304 PSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLSKG 363

Query: 379 GFLTAANEFALARKYAARLDLRAAALSVPVGTLSGGNQQKVVIGKWLATKPKVIILDEPT 438
             +  A+E      +    +++  +    +G LSGGNQQKV I K L TKPKV+ILDEPT
Sbjct: 364 VQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPT 423

Query: 439 KGIDIGSKAAVHGFISELAAEGLSIIMISSELPEILGMSDRAIVMREGLMAGQFERAEFS 498
           +G+D+G+K  ++  I++  AEG+SII++SSE+PE+LGMSDR +VM EG ++G+F  +E  
Sbjct: 424 RGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEAD 483

Query: 499 PEKLVRAATG 508
            EKL+  A G
Sbjct: 484 QEKLMACAVG 493



 Score = 83.2 bits (204), Expect = 2e-20
 Identities = 56/235 (23%), Positives = 112/235 (47%), Gaps = 19/235 (8%)

Query: 38  VDIALYPGKVTALIGENGAGKSTLVKILTGIYRPNEGEILLDGKAVHFHSAQDAIDAGVT 97
           V   L  G++  + G  GAG++ L+K++ G      G I L+G+ V+  S QD +  G+ 
Sbjct: 272 VSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQDGLANGIA 331

Query: 98  AIHQETVLFDELSVGENIFLGHAPKGRFGLIDWKTINERARILLEQLESTIDPTIRL--- 154
            I ++         G+ + LG + K    L     +++  +I        +D  IRL   
Sbjct: 332 YISEDRK-------GDGLVLGLSVKENMSLCALDQLSKGVQIRHADEVIAVDDFIRLFNI 384

Query: 155 ---------KDLSIAQRHLVAIARALSVEARIVIMDEPTAALSRKEIDDLFRIVENLKRQ 205
                     +LS   +  VAIA+ L  + +++I+DEPT  +      ++++++   K +
Sbjct: 385 KTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAE 444

Query: 206 GKAILFISHKFDEVYEIAENYAVFRDGKMVGAGTLATTPQDEIVRLMVGRDVTNA 260
           G +I+ +S +  EV  +++   V  +G++ G    +   Q++++   VGR+  +A
Sbjct: 445 GMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGRNPAHA 499