Pairwise Alignments

Query, 336 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score = 77.4 bits (189), Expect = 4e-19
 Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 8/278 (2%)

Query: 14  LSAALSVAGLGSIAEAADVKIALVVKSLGNGFFEAANKGAQEAAKDLGGVEIIYTGPTST 73
           +SAAL    +  +A+A D  +A+V+ +L N FF     GA+  AK+LG   I+       
Sbjct: 10  ISAALLSTSVSFVAQAQDT-VAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVLDSQNDP 68

Query: 74  TAEGQIEVINSLIAQGVDAIAISANDPDAVVPALKKAAQRGIKVISWDSGVAPEGRILQL 133
           + E  +  +  L  +GV AI I+  D DAV  A++ A +  I V++ D G A  G ++  
Sbjct: 69  SKE--LSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRG-ASRGEVVSH 125

Query: 134 NPSSNALIGKMCLQLAAAHLEGGKGDFAILSATTTSTNQNVWIGEMKKQLKDFPGLNLVT 193
             S N + G+M      A +        +     TS  +    GE          + L+ 
Sbjct: 126 IASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARE--RGEGFMNAVKGSKMQLLA 183

Query: 194 TVYGDDLADKSYREAQGLLSSQPNVKVIVAPTTVGVLAASQAVKDAGKIGQVFVTGLGLP 253
           +   D    K     + LL++ P+V+ + A      L A +A++ +GK   V + G    
Sbjct: 184 SQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGK--SVMIVGFDGT 241

Query: 254 SEMAGAIKSGATKEFAIWNPIDLGYSATQIAYRLVKGE 291
            +   A++ G         P  +G    + A +++KGE
Sbjct: 242 DDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGE 279