Pairwise Alignments

Query, 336 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 327 a.a., autoinducer 2 ABC transporter substrate-binding protein from Rahnella sp. WP5

 Score =  124 bits (310), Expect = 4e-33
 Identities = 104/315 (33%), Positives = 154/315 (48%), Gaps = 19/315 (6%)

Query: 14  LSAALSVAGLGSIAEAAD-VKIALVVKSLGNGFFEAANKGAQ-EAAKDLGGVEIIYTGPT 71
           L+   + A L   A AAD +++ +VVK  GN +F A   G + EAAK   G++    GPT
Sbjct: 6   LACLFATAMLSLSAHAADKIRMGVVVKVGGNAWFNAMEAGIKSEAAKR--GIDAWQVGPT 63

Query: 72  STTAEGQIEVINSLIAQGVDAIAISANDPDAVVPALKKAAQRGIKVISWDSGVAPEGRI- 130
           S     Q+  I  LIAQ VD I +  ND   + P LK+A   GIKVI  +S   P+ +  
Sbjct: 64  SADPALQVRAIEDLIAQKVDVIGVVPNDARVLEPVLKRAHDAGIKVIVHES---PDQKYA 120

Query: 131 ---LQLNPSSNALIGKMCLQLAAAHLEGGKGDFAILSATTTSTNQNVWI-GEMKKQLKDF 186
               ++  ++   I  M   +A A     KGD+A+   + T      W    +  Q + +
Sbjct: 121 DWDFEMVDATQHGINHM---IALAQCMKEKGDYAVYVGSLTVPLHQKWADAAINYQKEHY 177

Query: 187 PGLNLVTTVYG-DDLADKSYREAQGLLSSQPNVKVIVAPTTVGVLAASQAVKDAGKIGQV 245
           P ++LV   +G  +  D S R    L+S   N+K I+A  + G + A +AV + GK   +
Sbjct: 178 PDMHLVGDKFGVGESLDDSIRTTNDLMSKDANLKGILAIGSQGPIGAGRAVLNRGKTDDI 237

Query: 246 FVTGLGLPSEMAGAIKSGATKEFAIWNPIDLGYSATQIAYRLVKGEADGKPGSEIEAGRM 305
            V G   P + A  +K+GA K   IWNP+  G    +IA +L KGE     G  IE   M
Sbjct: 238 CVFGPFSPGQGASLVKAGAIKGGFIWNPMVAGEVFVRIAEKLEKGEKI-TDGMTIEG--M 294

Query: 306 GKIKVGENSEAAMAD 320
           GK+KV E +   + +
Sbjct: 295 GKVKVDEATHTILGN 309