Pairwise Alignments

Query, 278 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  201 bits (511), Expect = 3e-56
 Identities = 116/269 (43%), Positives = 173/269 (64%), Gaps = 8/269 (2%)

Query: 4   PILDVENLRIRY--GGSATEAVRGISFTLGR-ERLGIVGESGSGKSTVGRALLRLLP-SA 59
           P+L V NL + +       +AV+ +SF +   E L IVGESGSGKS    AL++LLP +A
Sbjct: 5   PLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNA 64

Query: 60  TITADR-LDFEGIDLLALSEKEMLKVRGRRMSMILQDPKFSLNPIRRVGDQVTETYLRHF 118
            I  +  + FEG +LL  ++ +M ++RG R+ MI Q+P  SLNP  RVG QV E    H 
Sbjct: 65  RIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCHR 124

Query: 119 KASKSQAREKALAMLDAVKIRDAERVYEQYPHEISGGMGQRVMIAMMLLADPDLVIADEP 178
             S++QA+++ L +   V + D +  Y+++PHE SGG  QR+MIAM L+ +PD++IADEP
Sbjct: 125 NVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADEP 184

Query: 179 TSALDVTVRLQVLNILDGLVRDRGIGLIMISHDLNLVRNFCDRVLIMYAGRVVETLAARD 238
           T+ALDVTV+ +VL ++  +  + G+ ++ I+HDL +V+   DRVL+M  G VVE  +   
Sbjct: 185 TTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTEQ 244

Query: 239 LD-QAQHPYTRGLLAAQPRIGGSRSPLAV 266
           L  Q +H YTR L+ + P+  GS+ P+AV
Sbjct: 245 LFLQPEHDYTRMLINSIPK--GSKDPVAV 271



 Score =  176 bits (445), Expect = 1e-48
 Identities = 111/262 (42%), Positives = 162/262 (61%), Gaps = 19/262 (7%)

Query: 4   PILDVENLRIRY---------GGSATEAVRGISFTLGR-ERLGIVGESGSGKSTVGRALL 53
           P+L  E++R+++              EAV+GIS  L + E LGIVGESGSGKST+GRAL+
Sbjct: 275 PLLKAEDIRVKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKSTLGRALI 334

Query: 54  RLLPSATITADRLDFEGIDLLALSEKEMLKVRGRRMSMILQDPKFSLNPIRRVGDQVTET 113
            LLPS      ++ F+G D  ALSEK+ L ++ + + M+ QDP  SL+P   VG+ +TE 
Sbjct: 335 GLLPST----GQIAFKGQDFRALSEKQRLALK-KDIQMVFQDPYGSLSPRMTVGEIITEG 389

Query: 114 YLRHFK-ASKSQAREKALAMLDAVKIRDAERVYEQYPHEISGGMGQRVMIAMMLLADPDL 172
            L H    SK +  ++A   L+ V++ D   +  +YPHE SGG  QR+ IA  L+ +P  
Sbjct: 390 LLVHQPHISKLERMQRARRALEEVRL-DPNSI-NRYPHEFSGGQRQRIAIARALILEPSF 447

Query: 173 VIADEPTSALDVTVRLQVLNILDGLVRDRGIGLIMISHDLNLVRNFCDRVLIMYAGRVVE 232
           ++ DEPTSALD +V+L V+ +L  + + R IG + ISHDL +V+   DRVL+M  G+V+E
Sbjct: 448 ILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQKGQVME 507

Query: 233 TLAARDL-DQAQHPYTRGLLAA 253
             +A  +    QH YT+ L+AA
Sbjct: 508 QGSAESIFHNPQHEYTKKLIAA 529