Pairwise Alignments

Query, 278 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  211 bits (536), Expect = 4e-59
 Identities = 116/258 (44%), Positives = 165/258 (63%), Gaps = 6/258 (2%)

Query: 5   ILDVENLRIRYG--GSATEAVRGISFTLGR-ERLGIVGESGSGKSTVGRALLRLLP--SA 59
           +L ++NL + +G  G A     G+S T+ R E L +VGESGSGKS    A+LRLLP  SA
Sbjct: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64

Query: 60  TITADRLDFEGIDLLALSEKEMLKVRGRRMSMILQDPKFSLNPIRRVGDQVTETYLRHFK 119
              +  + F  +D L  SE+ +  +RG R+ MI Q+P  SLNP+ ++G Q+ ET   H  
Sbjct: 65  HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124

Query: 120 ASKSQAREKALAMLDAVKIRDAERVYEQYPHEISGGMGQRVMIAMMLLADPDLVIADEPT 179
              + A +KA+  L  V IR  E     YPHE+SGG  QRVMIAM L+ +P+L+IADEPT
Sbjct: 125 LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPT 184

Query: 180 SALDVTVRLQVLNILDGLVRDRGIGLIMISHDLNLVRNFCDRVLIMYAGRVVETLAARDL 239
           +ALDV+V+ Q+L++L  L ++ G+ ++ I+HDL++VR   DRV +M +G++VET A   L
Sbjct: 185 TALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTL 244

Query: 240 DQA-QHPYTRGLLAAQPR 256
             A  HPYT+ L+ A PR
Sbjct: 245 FAAPAHPYTQQLINADPR 262



 Score =  148 bits (374), Expect = 2e-40
 Identities = 99/263 (37%), Positives = 147/263 (55%), Gaps = 19/263 (7%)

Query: 1   MEKP-ILDVENLRIRY---GG------SATEAVRGISFTLGR-ERLGIVGESGSGKSTVG 49
           M+ P +L  E LR+ +   GG      +  +AV  +SFTL + + LG+VGESGSGKST G
Sbjct: 270 MDAPTLLQAEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTG 329

Query: 50  RALLRLLPSATITADRLDFEGIDLLALSEKEMLKVRGRRMSMILQDPKFSLNPIRRVGDQ 109
            A+L+LL S       + F G DL AL  +EML  R + M ++ QDP  +LNP   V   
Sbjct: 330 MAILKLLASQ----GAIRFAGQDLQALKRREMLPYRSK-MQVVFQDPYSALNPRMSVAQV 384

Query: 110 VTETYLRHFKASKSQAREKALAMLDAVKIRDAERVYEQYPHEISGGMGQRVMIAMMLLAD 169
           + E    H + +  +      A++  V +    R   +YP+E SGG  QR+ IA  L+  
Sbjct: 385 IGEGLRVHSQLNDDEIDHAICAVMQEVGLDVDTR--HRYPNEFSGGQRQRIAIARALVLK 442

Query: 170 PDLVIADEPTSALDVTVRLQVLNILDGLVRDRGIGLIMISHDLNLVRNFCDRVLIMYAGR 229
           P+ ++ DEPTS+LD TV+ QVL++L  L +   +  + ISHDL ++R  C   ++M AG 
Sbjct: 443 PEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAGE 502

Query: 230 VVETLAARDL-DQAQHPYTRGLL 251
           +VE    + L +   HPYT+ L+
Sbjct: 503 IVEHGETQSLFENPSHPYTQQLV 525