Pairwise Alignments

Query, 278 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  202 bits (513), Expect = 2e-56
 Identities = 111/257 (43%), Positives = 166/257 (64%), Gaps = 5/257 (1%)

Query: 5   ILDVENLRIRYGG--SATEAVRGISFTLGR-ERLGIVGESGSGKSTVGRALLRLL-PSAT 60
           +L+V+NLRI Y        AV+ ++  + R E +G+VGESG+GKSTVG A++ LL P  T
Sbjct: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62

Query: 61  ITADRLDFEGIDLLALSEKEMLKVRGRRMSMILQDPKFSLNPIRRVGDQVTETYLRHFKA 120
           I    +   G  +  LS + M +VRG ++  I QDP  SLNP+  V  Q+TET   + + 
Sbjct: 63  IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQV 122

Query: 121 SKSQAREKALAMLDAVKIRDAERVYEQYPHEISGGMGQRVMIAMMLLADPDLVIADEPTS 180
           S  +A ++AL+++  V I   E   +QYPH+ SGGM QRV+IA+ L  +PDL+IADEPT+
Sbjct: 123 SAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTT 182

Query: 181 ALDVTVRLQVLNILDGLVRDRGIGLIMISHDLNLVRNFCDRVLIMYAGRVVE-TLAARDL 239
           ALDV+++ Q+LN++  L +   +G ++++HD+ +V N  DRV +MY G +VE    A+ L
Sbjct: 183 ALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVL 242

Query: 240 DQAQHPYTRGLLAAQPR 256
              +HPYTR L++A PR
Sbjct: 243 GTPEHPYTRSLISAVPR 259



 Score =  160 bits (404), Expect = 8e-44
 Identities = 100/270 (37%), Positives = 148/270 (54%), Gaps = 17/270 (6%)

Query: 4   PILDVENLRIRYGGSAT---------EAVRGISFTLGR-ERLGIVGESGSGKSTVGRALL 53
           P+L VEN+ +R+    +         +A   +SF +   E  G+VGESGSGKST+ R + 
Sbjct: 301 PLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIA 360

Query: 54  RLLPSATITADRLDFEGIDLLALSEKEMLKVRGRRMSMILQDPKFSLNPIRRVGDQVTET 113
            L       A R+ FEGIDL AL  +   +   R+M M+ Q+P  S+NP  ++ D + E 
Sbjct: 361 GLYQP---NAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEP 417

Query: 114 YLRH-FKASKSQAREKALAMLDAVKIRDAERVYEQYPHEISGGMGQRVMIAMMLLADPDL 172
              H    S+S+ R+    +L+ V +     +  +YPHE SGG  QR+ IA  L   P L
Sbjct: 418 IRFHKLTRSESETRQIVNDLLEHVGLGKMAGL--KYPHEFSGGQRQRISIARALATRPRL 475

Query: 173 VIADEPTSALDVTVRLQVLNILDGLVRDRGIGLIMISHDLNLVRNFCDRVLIMYAGRVVE 232
           +I DEPTSALDV+V+ Q+LN+L  L  +  + ++ ISHDL ++R  CDRV +M  G ++E
Sbjct: 476 LICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLE 535

Query: 233 TLAARDL-DQAQHPYTRGLLAAQPRIGGSR 261
                 L    QH Y++ L++  P   G R
Sbjct: 536 VAPTEQLFTDPQHEYSKKLISLMPEFTGLR 565