Pairwise Alignments

Query, 252 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  184 bits (468), Expect = 3e-51
 Identities = 105/246 (42%), Positives = 147/246 (59%), Gaps = 9/246 (3%)

Query: 14  FGSGHTALKVLPSVSFRVEPGECFGLVGESGSGKSTVLRCVSMLNDFWTGDILIDGRSVR 73
           F S    ++   +VSF V  GE FGLVGESGSGKST+ R ++ L     G +  +G  + 
Sbjct: 319 FESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQPNAGRVTFEGIDLT 378

Query: 74  DIPLIERCRML----QMVFQDPYGSLHPRQSVRTVLSESLAIHKLGDREERMRKVITD-- 127
            +      R L    QMVFQ+PY S++PR  +  +++E +  HKL   E   R+++ D  
Sbjct: 379 ALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLL 438

Query: 128 --VGLPVSFLDRFPHQLSGGQRQRVAIARALILEPSLLLLDEPTSALDVSVQAEILNLLQ 185
             VGL      ++PH+ SGGQRQR++IARAL   P LL+ DEPTSALDVSVQA+ILNLL+
Sbjct: 439 EHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLK 498

Query: 186 RLREERGFTYIMVTHDLAVVDHMCDRFAVMLRGEITEILPREAIAGNGATHPYARELIGA 245
            L++E   T + ++HDL V+  MCDR  VM  G + E+ P E +      H Y+++LI  
Sbjct: 499 DLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLF-TDPQHEYSKKLISL 557

Query: 246 SLEYEG 251
             E+ G
Sbjct: 558 MPEFTG 563



 Score =  153 bits (387), Expect = 7e-42
 Identities = 96/254 (37%), Positives = 148/254 (58%), Gaps = 14/254 (5%)

Query: 5   VETRDLSITFGSGHTALKVLPSVSFRVEPGECFGLVGESGSGKSTVLRCV-SMLNDFWT- 62
           +E ++L I + S H     + S++  ++ GE  G+VGESG+GKSTV   V  +L+   T 
Sbjct: 4   LEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGTI 63

Query: 63  --GDILIDGRSVRDIPLIE----RCRMLQMVFQDPYGSLHPRQSVRTVLSESLAIHKLGD 116
             G++ ++G  +  +        R   +  +FQDP  SL+P  +V   L+E++  +    
Sbjct: 64  AGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQVS 123

Query: 117 REERMRKVIT---DVGLPV--SFLDRFPHQLSGGQRQRVAIARALILEPSLLLLDEPTSA 171
            EE  ++ ++    VG+P   + L ++PHQ SGG RQRV IA AL  EP L++ DEPT+A
Sbjct: 124 AEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTTA 183

Query: 172 LDVSVQAEILNLLQRLREERGFTYIMVTHDLAVVDHMCDRFAVMLRGEITEILPREAIAG 231
           LDVS+Q +ILNL++ L ++     ++VTHD+ VV ++ DR AVM RG++ E  P   + G
Sbjct: 184 LDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVLG 243

Query: 232 NGATHPYARELIGA 245
               HPY R LI A
Sbjct: 244 T-PEHPYTRSLISA 256