Pairwise Alignments

Query, 252 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 548 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  181 bits (458), Expect = 4e-50
 Identities = 110/251 (43%), Positives = 149/251 (59%), Gaps = 14/251 (5%)

Query: 5   VETRDLSITFGSGHTALKVLPSVSFRVEPGECFGLVGESGSGKSTVLRCVSMLNDFWTGD 64
           +  RD+  T+GS     + L  +SF + PGE   +VGESGSGKST+ R +  L++  +G 
Sbjct: 276 LSVRDVRKTYGS----FEALKGISFDLMPGETMAVVGESGSGKSTLARALLRLDEPDSGT 331

Query: 65  ILIDGR---SVRDIPLIERCRMLQMVFQDPYGSLHPRQSVRTVLSESLAIHK----LGDR 117
            L  GR   ++    L +  R LQMVFQDP  SL+PR +V  ++SE+  IH         
Sbjct: 332 ALWKGRDLFALSPAELYKLRRDLQMVFQDPTQSLNPRMTVYQLISEAWVIHPDILPKAKW 391

Query: 118 EERMRKVITDVGLPVSFLDRFPHQLSGGQRQRVAIARALILEPSLLLLDEPTSALDVSVQ 177
            ER+ +++  VGL    + R+PHQ SGGQRQR+AIARAL LEP L++ DE  SALDVSVQ
Sbjct: 392 RERVAELLVQVGLSAEHMSRYPHQFSGGQRQRIAIARALALEPQLIICDEAVSALDVSVQ 451

Query: 178 AEILNLLQRLREERGFTYIMVTHDLAVVDHMCDRFAVMLRGEITEI-LPREAIAGNGATH 236
           A+++ LL RLR E G  +I + HDL VV    D   VM +GE+ E+   RE    +    
Sbjct: 452 AQVIELLDRLRREMGIAFIFIAHDLPVVRDFADYVMVMQQGEVVELGTVREVF--DTPRQ 509

Query: 237 PYARELIGASL 247
            Y R L+ ASL
Sbjct: 510 AYTRALLAASL 520



 Score =  174 bits (442), Expect = 3e-48
 Identities = 106/256 (41%), Positives = 152/256 (59%), Gaps = 16/256 (6%)

Query: 5   VETRDLSITFGSGHTALKVLPSVSFRVEPGECFGLVGESGSGKSTVLRCVSMLNDF---- 60
           +E R+LS+ F +    +  + S+S+ ++ GE   ++GESGSGKS     +  L D     
Sbjct: 6   LEVRNLSVEFHTAAGVVHAVKSISYHLDKGETLAILGESGSGKSVSSSAIMNLIDMPPGR 65

Query: 61  -WTGDILIDGRSVRDIPLIERC----RMLQMVFQDPYGSLHPRQSVRTVLSESLAIHKLG 115
             +G+IL+DGR +  +P  ER     R + M+FQDP   L+P  SV   +SE++  H L 
Sbjct: 66  ISSGEILLDGRDLLTMPAEERREVNGRRVAMIFQDPLSHLNPVYSVGWQISEAMTTHGLA 125

Query: 116 D---REERMRKVITDVGLPVS--FLDRFPHQLSGGQRQRVAIARALILEPSLLLLDEPTS 170
               REE +R ++  VG+P     + ++PH+ SGGQRQRV IA AL L P LL+ DEPT+
Sbjct: 126 GSKAREEALR-LLRRVGIPEPERAMRKYPHEFSGGQRQRVMIAMALALRPDLLIADEPTT 184

Query: 171 ALDVSVQAEILNLLQRLREERGFTYIMVTHDLAVVDHMCDRFAVMLRGEITEILPREAIA 230
           ALDV+VQAE+L LL+ L+ E G   +++THDL VV  + DR  VM +G I E      I 
Sbjct: 185 ALDVTVQAEVLKLLKELQRETGMAVLIITHDLGVVSEIADRVVVMEKGAIVEAGTVREIY 244

Query: 231 GNGATHPYARELIGAS 246
            N   HPY ++LI A+
Sbjct: 245 KN-PQHPYTQKLIAAA 259