Pairwise Alignments

Query, 252 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 546 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  189 bits (481), Expect = 8e-53
 Identities = 116/255 (45%), Positives = 150/255 (58%), Gaps = 12/255 (4%)

Query: 3   VSVETRDLSITFGSGHTA----LKVLPSVSFRVEPGECFGLVGESGSGKSTVLRCVSMLN 58
           + V+  D   T  SG  A    L  + ++SF V  GE  G+VGESGSGKSTV R +  LN
Sbjct: 281 LEVKNIDKFYTLSSGFFAKPARLHAVKNLSFDVAAGETIGIVGESGSGKSTVARVLLGLN 340

Query: 59  DFWTGDILIDGRSVRDIP---LIERCRMLQMVFQDPYGSLHPRQSVRTVLSESLAIHKLG 115
           +   G+ L  GR V  +    L+   R +QMVFQDPY S++PR +V  ++SE   IHK  
Sbjct: 341 EASGGEALFHGRDVLKMDRKQLLAFRRKVQMVFQDPYSSMNPRMTVFDIVSEPWRIHKDI 400

Query: 116 DREERMRKVITD----VGLPVSFLDRFPHQLSGGQRQRVAIARALILEPSLLLLDEPTSA 171
             + R R  +T+    VGL      R+PHQ SGGQRQR+AIARAL  +P L++ DE  SA
Sbjct: 401 LEKTRWRDRVTELLGLVGLNPEHAKRYPHQFSGGQRQRIAIARALACDPELVVCDEAVSA 460

Query: 172 LDVSVQAEILNLLQRLREERGFTYIMVTHDLAVVDHMCDRFAVMLRGEITEILPREAIAG 231
           LDVSVQ ++++LL  LR+  G  YI +THDL +V H  DR  VM  GEI E    E I  
Sbjct: 461 LDVSVQVQVIDLLAELRDRLGLAYIFITHDLPIVRHFADRIIVMKSGEIVEHATTEEIFR 520

Query: 232 NGATHPYARELIGAS 246
           N   H Y R+LI A+
Sbjct: 521 N-PQHAYTRQLINAT 534



 Score =  163 bits (413), Expect = 6e-45
 Identities = 103/255 (40%), Positives = 139/255 (54%), Gaps = 15/255 (5%)

Query: 5   VETRDLSITFGSGHTALKVLPSVSFRVEPGECFGLVGESGSGKSTVLRCVSMLNDFWTGD 64
           +E +DL++ F S   A +    VSF V+ GE   ++GESGSGKS     +  L D   GD
Sbjct: 7   LEVKDLTVDFLSLGGAFRATSGVSFHVDAGETLVILGESGSGKSVSASAIMGLIDTPPGD 66

Query: 65  ILID-----GRSVRDIPLIERC----RMLQMVFQDPYGSLHPRQSVRTVLSESLAIHKLG 115
           I        GR +  +   ER     R + M+FQDP   L+P  ++   L E   +H + 
Sbjct: 67  ICAGSVAYRGRDLSSLSEGERRDLNGRRIAMIFQDPLSHLNPVYTIGWQLEEVFTVHGVA 126

Query: 116 DREERMRKVITDVGL-----PVSFLDRFPHQLSGGQRQRVAIARALILEPSLLLLDEPTS 170
              E  ++ I  +G      P   +D++PHQ SGGQRQR+ I  A+ L P +L+ DEPT+
Sbjct: 127 SGAEARQRAIEILGRVGIPEPEKRIDQYPHQFSGGQRQRIMIGMAIALRPEILIADEPTT 186

Query: 171 ALDVSVQAEILNLLQRLREERGFTYIMVTHDLAVVDHMCDRFAVMLRGEITEILPREAIA 230
           ALDVSVQA+IL LL++L+ E G   IM+THDL V  +M DR  VM  G I E     A+ 
Sbjct: 187 ALDVSVQAQILELLKKLQAEDGLAIIMITHDLEVAANMADRVIVMKSGRIVEEGEARAVF 246

Query: 231 GNGATHPYARELIGA 245
            N A H Y R LI A
Sbjct: 247 ENPA-HSYTRTLINA 260