Pairwise Alignments

Query, 532 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  114 bits (286), Expect = 7e-30
 Identities = 116/516 (22%), Positives = 226/516 (43%), Gaps = 76/516 (14%)

Query: 1   MKHFLATAALGA-LLIGAMPLSSFAETPKDQLIVATTMSNILTLDPAAITGRETVQVLNN 59
           MK+ LA A + A L  GAM             I     ++ +++DP       T+Q+ + 
Sbjct: 4   MKNKLALALIAAGLSFGAMAAD----------ITVAYDADPVSMDPHEQLSGGTLQLSHM 53

Query: 60  VYDTLVVLSPEDRSVQPRLAERWEIAEDRKSIRFYLRADARFASGNVVTAKDVAWSLKRL 119
           V+D L+  + +    +PRLAE W+   D +++RF LR   +F SGN  TA DV W+  RL
Sbjct: 54  VFDPLIRFT-QKMEFEPRLAESWQRV-DNETMRFTLRKGVKFHSGNDFTADDVVWTFNRL 111

Query: 120 --------LARNLAQSSFLKTRGFKLEEADKLFVAENDQTFVLNIPKPDDPNLLLMILAQ 171
                   +   L   + +     +++ A    + EN  T++     P D          
Sbjct: 112 KESADFKGIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIF----PMDSKFYT----- 162

Query: 172 NGPGSIIDSKTALENEKDGDLGGAWLTLNSAGSGPFKLTQWKSNEYIILTRNDDYWGEKA 231
              G+  D K   E  K G+   ++ + N +G+GPF +T  +    +   RN +YW + +
Sbjct: 163 ---GTTADGKNKAEIVKHGN---SFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKAS 216

Query: 232 K--MKRILMRHLPESQSQRLMLEKGDIDVAYSLQAPDLKSLEADKAVTIESTPGSGFYYL 289
           K  + ++ +  + E  ++   L  G +D+   +   D + ++  K V + + PG+     
Sbjct: 217 KGNVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITF 276

Query: 290 SVSMK-NEKFANKKVREALRYLIDYDGLDKAVMPYYGKLHQRSLSTGVMGALPDQGYKLD 348
            ++   N    + +VR+A+ Y I+ +G+   VM        +    G  G   +   + D
Sbjct: 277 QMNQNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPRFD 336

Query: 349 IEKAKALLTEAGYPNGFKTTL-----RVLSEDPFMKAATAIQNTLAQAGIQAELISGSGD 403
           + KAK L+ EAGY  GF  T+     R ++++   +AA+A+   L++ GI+ +L +    
Sbjct: 337 LNKAKELMKEAGYEKGFNLTMIAPNNRYVNDEKIAQAASAM---LSKIGIKVDLKTMPKA 393

Query: 404 QIYGAMRERNFELLLGRGGGGQQPHPDNNLRSIAYNPNNADDAKLTNYQSWRTS------ 457
           Q +    +   ++L+                 I ++P+  D A  T + +          
Sbjct: 394 QYWPEFDKCAADMLM-----------------IGWHPDTEDSANFTEFLTMTRDSNTGKG 436

Query: 458 ------FFDEKLNKMIEEALVERDVAKQTKLYEDLQ 487
                 + + +++K++  A  E D+ K++ + + ++
Sbjct: 437 QYNCGYYSNAEVDKLVNAANEETDLEKRSTMLKKVE 472