Pairwise Alignments

Query, 531 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  137 bits (346), Expect = 7e-37
 Identities = 136/508 (26%), Positives = 233/508 (45%), Gaps = 50/508 (9%)

Query: 9   HKIALAAGAFVALPGGSFAAAEEPVSGGTLKIVYFPEPTQLVAINTSAGGPQFIGSKIYD 68
           +K+ALA  A     G SF A    ++     + Y  +P  +      +GG   +   ++D
Sbjct: 6   NKLALALIA----AGLSFGAMAADIT-----VAYDADPVSMDPHEQLSGGTLQLSHMVFD 56

Query: 69  GLLTYDYELSPKPSLAKEWSVSADGLEYVFHLQPNAKFHDGKPVTSADVEFSILRLKEAH 128
            L+ +  ++  +P LA+ W    D     F L+   KFH G   T+ DV ++  RLKE+ 
Sbjct: 57  PLIRFTQKMEFEPRLAESWQ-RVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRLKESA 115

Query: 129 PRGRATFANVESIDTSNPLVAKVKLSKPAPGLITALASSESPVVPKHIFETFKPTDNPKP 188
              +  F  + S+   +    ++K +   P LI  +A+   P+  K  F T    D    
Sbjct: 116 DF-KGIFEPLVSLTKVDDYTIEIKTAGTYP-LIENVATYIFPMDSK--FYTGTTADGKNK 171

Query: 189 AQII------------GSGPFVLKEWVPGSHILLEKNANYWD-APRPYLDRVIIRLINDA 235
           A+I+            G+GPF +     G  +  ++N NYWD A +  +D++ + +I + 
Sbjct: 172 AEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKED 231

Query: 236 GARAAALETGEGDIGPNPVALADLERLKSIPTLKV----DDRIYAYAGQQNQLVINLEND 291
             R AAL +G  D+   PV+  D +R+K    + +      R+  +   QN       N 
Sbjct: 232 ATRVAALLSGGVDMIA-PVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNS------NP 284

Query: 292 YLKELKVRQAIAHAIDVPALIDTVLYGYAVPSPTPISPGLAKFHNPDIGFAKFDVALAEK 351
            LK+++VRQAI +AI+   ++D V+ G A  +      G A + N ++   +FD+  A++
Sbjct: 285 ALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGY-NENLK-PRFDLNKAKE 342

Query: 352 LLDEAGFPRKDGGKRFKLRVTTNPFNPQTYSDFIAQA----LSKIGIEADIQKFDFGTYV 407
           L+ EAG+      K F L +   P N     + IAQA    LSKIGI+ D++      Y 
Sbjct: 343 LMKEAGYE-----KGFNLTMIA-PNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYW 396

Query: 408 KVVYTDRAWDLSVESLSNTFDPTAGVQRVYWSKNFKIGLPFSNASHYANPEVDRLLEAAA 467
                  A  L +    +T D     + +  +++   G    N  +Y+N EVD+L+ AA 
Sbjct: 397 PEFDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAAN 456

Query: 468 VEPDIEKRAAFFKEFQAVVAKDLPVINL 495
            E D+EKR+   K+ + ++  +   + L
Sbjct: 457 EETDLEKRSTMLKKVEEILYNEAAFVPL 484