Pairwise Alignments

Query, 331 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  192 bits (487), Expect = 1e-53
 Identities = 114/289 (39%), Positives = 169/289 (58%), Gaps = 20/289 (6%)

Query: 57  LKIFLTNPNAIVGLLFLATVLIAALIAPLIYPGDPLEMVA--------RPFLWPGQNAAY 108
           L  FL +  A+         +I A+ APLI P +P ++ +         P    G N  +
Sbjct: 20  LYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHF 79

Query: 109 PLGTDSMGRDVLAGIVHGARISLTVGVVATLIGLTIGISIGAFAGYFGGVIDDILVKLIE 168
            LGTD  GRD+ + I++G+R+SLT+G +A  + LT+GI IG  AGYFGG ID  L++  +
Sbjct: 80  LLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFAD 139

Query: 169 IFQTLPNFVLLVVLVAI----------AQPSVTTVTSAIGIITWPLVARLTRAEFRAIRE 218
           I  +    ++ +++ AI          +Q +V  +   IG+  WP  AR  RA   A ++
Sbjct: 140 IQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKK 199

Query: 219 KDYVLAARSLGYGHARIVFQEILPNALPPIIVTSSVMVAGAILMEAALSFMGLGDP-NRV 277
           K+YV AAR +G+   RI+F+ ILPN L PI+V S+V VA AI+ EAALSF+GLG P ++ 
Sbjct: 200 KEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQP 259

Query: 278 SWGSMIGSGRDVIRT-AWYLTALPGLAIVFTVISLNLISDGLNDALNPR 325
           S GS+I  G   I + AW++TA PG+ +V  V+ +NL+ D L D  NP+
Sbjct: 260 SLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPK 308