Pairwise Alignments

Query, 551 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 536 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  332 bits (850), Expect = 3e-95
 Identities = 203/531 (38%), Positives = 304/531 (57%), Gaps = 15/531 (2%)

Query: 3   NLVEIRGLKVEATTDSGRRIQIIRGVDIDIAEGEIVALIGESGSGKTTIA---LTLMGYA 59
           NL+E+R L VE      RR +++ GV  DI  GE +AL+GESGSGK+  A   L L+ Y 
Sbjct: 5   NLIEVRDLAVEFIVGE-RRQRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPY- 62

Query: 60  RPGCRISGGSVTVAGRDMVQLSEMERAKIRGTKISYVPQSAAAAFNPAQKIIDQVIEVTR 119
            P      G++  AG++++ L E     IRG +I+ + Q    + NP   I  Q+ EV  
Sbjct: 63  -PLAHHPTGTIQYAGQNLLGLKEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEVLG 121

Query: 120 IHDLMPPQEARRRAVELFKALSLPNPETIGERYPHQVSGGQLQRLSAAMALIGNPELVIF 179
           IH  +  + A RR +EL + + +P P    +  PH++SGGQ QR+  AMAL   PEL+I 
Sbjct: 122 IHKGLSGKVATRRTLELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIA 181

Query: 180 DEPTTALDVTTQIEVLRAFKSAMRKGGIGGVYVSHDLAVVAQIADRIVVLKGGEIQETGT 239
           DEPTTALDVT Q+++L   K    + G+  + +SHDL +V +IA R+ V++ G I E  +
Sbjct: 182 DEPTTALDVTVQLKILELLKQLQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQAS 241

Query: 240 TTDILENAQHPYTRELLTAFNDKVRTVAPLKQNGAKPLLDIEKLIAGYGTKG---DDHMP 296
             ++    QHPYTRELL A      +  P       PLL +E L   +  K       + 
Sbjct: 242 CEELFRAPQHPYTRELLGA----EPSGTPASNVVGPPLLQVEDLKVWFPIKKGLFKRTVD 297

Query: 297 LVRAVDSVSLAVYPGRNLGIIGESGCGKSTLARAIAGILPAASGHVIFEGRQLDADARRR 356
            ++AVD +  ++  G+ LGI+GESG GKSTL  AI  ++  + G + FEG+QLD+  +++
Sbjct: 298 YIKAVDGIRFSLPQGQTLGIVGESGSGKSTLGLAILRLI-GSQGGIRFEGKQLDSLTQQQ 356

Query: 357 TSDQLRRMQIVFQYADTALNPAKSIEDILGRPLAFYHSLKGKARDARIDQLLDMVKLPRS 416
                R MQ+VFQ    +L+P   +  I+G  L  +       ++  I   L  V L   
Sbjct: 357 VRPLRREMQVVFQDPFGSLSPRMCVSQIVGEGLRIHKIGTEAEQEQAIIAALKEVGLDPE 416

Query: 417 VRHRHPSGLSGGQKQRVNFARALAAEPSLIICDEITSALDTVVAAAIIDLLGELQRELNL 476
            R+R+P   SGGQ+QR+  ARAL  +P+LI+ DE TSALD  V   +++LL  LQ + NL
Sbjct: 417 TRNRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQTKYNL 476

Query: 477 SYIFISHDLSVVESICDEIVVMYGGQKVEHLETDAI-KSPTHPYSKLLFSS 526
           +Y+FISHDL+VV+++  +++V+  GQ VE  +  +I  +P HPY++ L  +
Sbjct: 477 TYLFISHDLAVVKALSHQLMVVKHGQVVEQGDARSIFAAPQHPYTQQLLEA 527



 Score =  143 bits (361), Expect = 1e-38
 Identities = 91/244 (37%), Positives = 132/244 (54%), Gaps = 11/244 (4%)

Query: 299 RAVDSVSLAVYPGRNLGIIGESGCGKSTLARAIAGILPAASGH-----VIFEGRQLDADA 353
           R V+ VS  +  G  L ++GESG GKS  A +I  +LP    H     + + G+ L    
Sbjct: 24  RVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYPLAHHPTGTIQYAGQNL-LGL 82

Query: 354 RRRTSDQLR--RMQIVFQYADTALNPAKSIEDILGRPLAFYHSLKGKARDARIDQLLDMV 411
           + +T   +R  R+ ++FQ   T+LNP  SIE  +   L  +  L GK    R  +LL++V
Sbjct: 83  KEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEVLGIHKGLSGKVATRRTLELLELV 142

Query: 412 KLPRSVRHRH--PSGLSGGQKQRVNFARALAAEPSLIICDEITSALDTVVAAAIIDLLGE 469
            +P   +     P  LSGGQ+QRV  A ALA EP L+I DE T+ALD  V   I++LL +
Sbjct: 143 GIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELLKQ 202

Query: 470 LQRELNLSYIFISHDLSVVESICDEIVVMYGGQKVEHLETDAI-KSPTHPYSKLLFSSVP 528
           LQ  L +S + ISHDL++V  I   + VM  G  VE    + + ++P HPY++ L  + P
Sbjct: 203 LQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQASCEELFRAPQHPYTRELLGAEP 262

Query: 529 KLDP 532
              P
Sbjct: 263 SGTP 266