Pairwise Alignments

Query, 551 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  355 bits (910), Expect = e-102
 Identities = 208/560 (37%), Positives = 320/560 (57%), Gaps = 34/560 (6%)

Query: 3   NLVEIRGLKVEATTDSGRRIQIIRGVDIDIAEGEIVALIGESGSGKTTIALTLMGYARPG 62
           +L+E++ L++E  +  G    + + + +DI  GEIV ++GESG+GK+T+   ++    P 
Sbjct: 2   SLLEVKNLRIEYPSRHGVHAAV-KSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPP 60

Query: 63  CRISGGSVTVAGRDMVQLSEMERAKIRGTKISYVPQSAAAAFNPAQKIIDQVIEVTRIHD 122
             I+GG V + G  +  LS     ++RG+KI ++ Q    + NP   +  Q+ E    + 
Sbjct: 61  GTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANM 120

Query: 123 LMPPQEARRRAVELFKALSLPNPETIGERYPHQVSGGQLQRLSAAMALIGNPELVIFDEP 182
            +  +EA +RA+ L K + +P PE   ++YPHQ SGG  QR+  A+AL G P+L+I DEP
Sbjct: 121 QVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEP 180

Query: 183 TTALDVTTQIEVLRAFKSAMRKGGIGGVYVSHDLAVVAQIADRIVVLKGGEIQETGTTTD 242
           TTALDV+ Q ++L   +   +K  +G + V+HD+ VV+ + DR+ V+  G++ E G T  
Sbjct: 181 TTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAK 240

Query: 243 ILENAQHPYTRELLTA---------------FNDKVRTVAPL---------KQNGAK--- 275
           +L   +HPYTR L++A               + ++ + + PL          Q+  K   
Sbjct: 241 VLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTG 300

Query: 276 PLLDIEKLIAGYGTKG---DDHMPLVRAVDSVSLAVYPGRNLGIIGESGCGKSTLARAIA 332
           PLL +E +   + TK    +     V+A ++VS AV+ G   G++GESG GKST+AR IA
Sbjct: 301 PLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIA 360

Query: 333 GILPAASGHVIFEGRQLDADARRRTSDQLRR-MQIVFQYADTALNPAKSIEDILGRPLAF 391
           G+    +G V FEG  L A         LRR MQ+VFQ   T++NP   I DI+  P+ F
Sbjct: 361 GLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRF 420

Query: 392 YHSLKGKARDARI-DQLLDMVKLPRSVRHRHPSGLSGGQKQRVNFARALAAEPSLIICDE 450
           +   + ++   +I + LL+ V L +    ++P   SGGQ+QR++ ARALA  P L+ICDE
Sbjct: 421 HKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDE 480

Query: 451 ITSALDTVVAAAIIDLLGELQRELNLSYIFISHDLSVVESICDEIVVMYGGQKVEHLETD 510
            TSALD  V A I++LL +LQ ELNL+ +FISHDL V+  +CD + VM  G  +E   T+
Sbjct: 481 PTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTE 540

Query: 511 AI-KSPTHPYSKLLFSSVPK 529
            +   P H YSK L S +P+
Sbjct: 541 QLFTDPQHEYSKKLISLMPE 560



 Score =  131 bits (329), Expect = 8e-35
 Identities = 88/265 (33%), Positives = 139/265 (52%), Gaps = 16/265 (6%)

Query: 277 LLDIEKLIAGYGTKGDDHMPLVRAVDSVSLAVYPGRNLGIIGESGCGKSTLARAIAGILP 336
           LL+++ L   Y ++   H     AV S++L +  G  +G++GESG GKST+  A+  +L 
Sbjct: 3   LLEVKNLRIEYPSRHGVHA----AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLS 58

Query: 337 A----ASGHVIFEGRQ---LDADARRRTSDQLRRMQIVFQYADTALNPAKSIEDILGRPL 389
                A G V   G +   L   A R       ++  +FQ   T+LNP  ++E  L   +
Sbjct: 59  PPGTIAGGEVYLNGEKISGLSPQAMREVRGS--KIGFIFQDPMTSLNPLFTVEHQLTETI 116

Query: 390 AFYHSLKGKARDARIDQLLDMVKLPRSVRH--RHPSGLSGGQKQRVNFARALAAEPSLII 447
                +  +    R   L+  V +P+      ++P   SGG +QRV  A ALA EP LII
Sbjct: 117 HANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLII 176

Query: 448 CDEITSALDTVVAAAIIDLLGELQRELNLSYIFISHDLSVVESICDEIVVMYGGQKVEHL 507
            DE T+ALD  +   I++L+ EL ++ N+  + ++HD+ VV ++ D + VMY G  VE  
Sbjct: 177 ADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFG 236

Query: 508 ET-DAIKSPTHPYSKLLFSSVPKLD 531
            T   + +P HPY++ L S+VP+ D
Sbjct: 237 PTAKVLGTPEHPYTRSLISAVPRSD 261