Pairwise Alignments

Query, 551 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 546 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  356 bits (913), Expect = e-102
 Identities = 207/538 (38%), Positives = 307/538 (57%), Gaps = 9/538 (1%)

Query: 3   NLVEIRGLKVEATTDSGRRIQIIRGVDIDIAEGEIVALIGESGSGKTTIALTLMGYA-RP 61
           +L+E++ L V+  +  G   +   GV   +  GE + ++GESGSGK+  A  +MG    P
Sbjct: 5   HLLEVKDLTVDFLSLGGA-FRATSGVSFHVDAGETLVILGESGSGKSVSASAIMGLIDTP 63

Query: 62  GCRISGGSVTVAGRDMVQLSEMERAKIRGTKISYVPQSAAAAFNPAQKIIDQVIEVTRIH 121
              I  GSV   GRD+  LSE ER  + G +I+ + Q   +  NP   I  Q+ EV  +H
Sbjct: 64  PGDICAGSVAYRGRDLSSLSEGERRDLNGRRIAMIFQDPLSHLNPVYTIGWQLEEVFTVH 123

Query: 122 DLMPPQEARRRAVELFKALSLPNPETIGERYPHQVSGGQLQRLSAAMALIGNPELVIFDE 181
            +    EAR+RA+E+   + +P PE   ++YPHQ SGGQ QR+   MA+   PE++I DE
Sbjct: 124 GVASGAEARQRAIEILGRVGIPEPEKRIDQYPHQFSGGQRQRIMIGMAIALRPEILIADE 183

Query: 182 PTTALDVTTQIEVLRAFKSAMRKGGIGGVYVSHDLAVVAQIADRIVVLKGGEIQETGTTT 241
           PTTALDV+ Q ++L   K    + G+  + ++HDL V A +ADR++V+K G I E G   
Sbjct: 184 PTTALDVSVQAQILELLKKLQAEDGLAIIMITHDLEVAANMADRVIVMKSGRIVEEGEAR 243

Query: 242 DILENAQHPYTRELLTAFNDKVRTVAPLKQNGA-KPLLDIEKLIAGYG-TKGDDHMPL-V 298
            + EN  H YTR L+ A         P     A KP+L+++ +   Y  + G    P  +
Sbjct: 244 AVFENPAHSYTRTLINALPHADDRAPPRPARPAGKPILEVKNIDKFYTLSSGFFAKPARL 303

Query: 299 RAVDSVSLAVYPGRNLGIIGESGCGKSTLARAIAGILPAASGHVIFEGRQLDADARRRTS 358
            AV ++S  V  G  +GI+GESG GKST+AR + G+  A+ G  +F GR +    R++  
Sbjct: 304 HAVKNLSFDVAAGETIGIVGESGSGKSTVARVLLGLNEASGGEALFHGRDVLKMDRKQLL 363

Query: 359 DQLRRMQIVFQYADTALNPAKSIEDILGRPLAFYHSLKGKAR-DARIDQLLDMVKLPRSV 417
              R++Q+VFQ   +++NP  ++ DI+  P   +  +  K R   R+ +LL +V L    
Sbjct: 364 AFRRKVQMVFQDPYSSMNPRMTVFDIVSEPWRIHKDILEKTRWRDRVTELLGLVGLNPEH 423

Query: 418 RHRHPSGLSGGQKQRVNFARALAAEPSLIICDEITSALDTVVAAAIIDLLGELQRELNLS 477
             R+P   SGGQ+QR+  ARALA +P L++CDE  SALD  V   +IDLL EL+  L L+
Sbjct: 424 AKRYPHQFSGGQRQRIAIARALACDPELVVCDEAVSALDVSVQVQVIDLLAELRDRLGLA 483

Query: 478 YIFISHDLSVVESICDEIVVMYGGQKVEHLETDAI-KSPTHPYSKLLFSSVPKLDPTW 534
           YIFI+HDL +V    D I+VM  G+ VEH  T+ I ++P H Y++ L ++ PK  P W
Sbjct: 484 YIFITHDLPIVRHFADRIIVMKSGEIVEHATTEEIFRNPQHAYTRQLINATPK--PKW 539