Pairwise Alignments

Query, 283 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 300 a.a., putative D,D-dipeptide transport system permease protein from Phaeobacter inhibens DSM 17395

 Score =  134 bits (337), Expect = 2e-36
 Identities = 79/257 (30%), Positives = 127/257 (49%), Gaps = 2/257 (0%)

Query: 19  NAVGIFAFLVIFIWAMVAIFAPYLIPY-PVGDIVDLDYFGPMTSDLWLGSDYLGRDVFSR 77
           N + +   ++I I  + A FAP++ P  PVG  +      P  ++ W+G+D LGRD+FSR
Sbjct: 33  NPLAVLGAVIITILILAAAFAPWIAPQSPVGQDLSSRLLPPSWAN-WMGTDELGRDIFSR 91

Query: 78  ILMGARFTVGISLAAVTIACVSGVVLGMCAAVVGGWFDAMLSRFLDAVNSIPSKLFGLVV 137
           ++ GAR T+ I      I+   G+++G  A   GGW D +L    D   S+P  +  L  
Sbjct: 92  VVYGARITLMIVALVAVISAPLGLIIGAIAGYFGGWVDRILMGITDVFLSMPKLILALAF 151

Query: 138 VAAVGSSIPVLIVTLSVIYTPGAYRFARALAVNVNTMDFVTVARVRGESLLYLISSEILP 197
           VAA+G  I   I+ +++   P   R ARA  +     +F+   R+ G S   +I   +LP
Sbjct: 152 VAALGPGIENAIIAIAITAWPAYARIARAETLTFRNAEFIAATRLLGASHSRVILQHVLP 211

Query: 198 NIIRPVLADLGVRFVFIVLLLSGLSFLGLGLQPPNADWGALVRENIGGLPFAAPAVIFPS 257
                ++  + +    I+L  +GL FLGLG QPP  +WGA++      +         P 
Sbjct: 212 LCTSSMIVRVTLDMAGIILTAAGLGFLGLGAQPPLPEWGAMISRGRVFILDQWWVATMPG 271

Query: 258 LAIASLTISVNLLIDNL 274
           +AI  +++    L D L
Sbjct: 272 IAIIVVSLGFCFLGDGL 288