Pairwise Alignments

Query, 536 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  114 bits (284), Expect = 1e-29
 Identities = 113/417 (27%), Positives = 182/417 (43%), Gaps = 35/417 (8%)

Query: 111 LAESIETKDAKTWTVKLRSGVTFHDGKSLTADDVVYSLKRHLDPAVGSKVAKIAAQMTGF 170
           LAES +  D +T    LR GV FH G   TADDVV++  R  + A    + +    +T  
Sbjct: 71  LAESWQRVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRLKESADFKGIFEPLVSLT-- 128

Query: 171 KAVDKNTVEITLANPNADLPSILALHHFM-------IVADG---------ATDFSKGN-- 212
             VD  T+EI  A     + ++      M         ADG            F+  N  
Sbjct: 129 -KVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTADGKNKAEIVKHGNSFASENIS 187

Query: 213 GTGAFKLEKFEPGVRSVMAKNANYW-KSGGPHLDSFEFMAISDDNARVNALLSGDIQLAA 271
           GTG F +   E GV+    +N NYW K+   ++D      I +D  RV ALLSG + + A
Sbjct: 188 GTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAALLSGGVDMIA 247

Query: 272 AINPRALRLLDKQDGVVMSKTTSGNYTNLNIRLDQAPGNKTDFV-AGMKSLINREQIIKA 330
            ++P   + +    GV +            +  +  P  K   V   +   IN E I+  
Sbjct: 248 PVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSNPALKDVRVRQAIVYAINNEGIVDK 307

Query: 331 ALRGLGEVGNDQPVPPMSPYYNPDLKPKAFDLDKAKFHFEKAGV-IGQSIPVIA-SDAAG 388
            ++G       Q  P     YN +LKP+ FDL+KAK   ++AG   G ++ +IA ++   
Sbjct: 308 VMKGAATTAAQQS-PVGYAGYNENLKPR-FDLNKAKELMKEAGYEKGFNLTMIAPNNRYV 365

Query: 389 SSIDMAMIMQASAAQIGVKLDVQRVPSDGYWSNY-WLKAPIHFGNINPRPTPDILFS--L 445
           +   +A    A  ++IG+K+D++ +P   YW  +    A +     +P       F+  L
Sbjct: 366 NDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMIGWHPDTEDSANFTEFL 425

Query: 446 LYASDA-----PWNESQYKSPKFDKMMLEARGLLDLEKRKQIYFEMERMIADEAGTI 497
               D+      +N   Y + + DK++  A    DLEKR  +  ++E ++ +EA  +
Sbjct: 426 TMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRSTMLKKVEEILYNEAAFV 482