Pairwise Alignments

Query, 615 a.a., rhizobicin secretion from Agrobacterium fabrum C58

Subject, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  198 bits (503), Expect = 7e-55
 Identities = 141/548 (25%), Positives = 270/548 (49%), Gaps = 14/548 (2%)

Query: 23  KSTFLGVALVSGVVNILALTSPLFMLQVYDRVLASGSLPTLVGLALLALGLYGFQCLLDI 82
           K  +  V + S ++N+ A+ +P+F   VYD+V+ + +  TL  L+   L ++ F  +  +
Sbjct: 151 KHIYRDVLIASLLINLFAVAAPMFSRIVYDKVVPNLAFETLWVLSSGILVIFLFDFVFKM 210

Query: 83  IRARVLIRIGEDFDMRYSGRVHDAVVRLPLVNRMPGDGL--QPLRDLDNVRGFLSGTGPT 140
           +R+  +   G+  D+  S ++   V+ + +  R P  G   + L++ +++R F +    +
Sbjct: 211 LRSYFIDVAGKKSDILISSKLFSKVMGIRMEARPPSVGAFARHLQEFESIREFFTSATIS 270

Query: 141 AFFDLPWMPLYLGLCFLFH---VWIGVTALAGAVLLVSLTILTNIFSQKPIRDTMVENMA 197
           +  DLP+  L+L L +L     VW+ V    G ++LV  + L     ++ I +       
Sbjct: 271 SLIDLPFALLFLVLIWLMAGHLVWVPVI---GVLILVIYSFLIQSRLKRAIEEGSRLASQ 327

Query: 198 RNRQLEASRRNAEVVQAMGLGRRLGKRWQSSNEAYLAANRKAGDVAGGLGNLAKSLRVVL 257
           +   L  S    E V+  G   +   RW+ +       N K+  +   + N A  ++   
Sbjct: 328 KYANLIESLAGLETVKLFGAQGQFQYRWEEAVAHMANWNIKSRRITDSIQNTAGFVQQAA 387

Query: 258 QSAILAVGAWLVIRQEASGGVMIASSIMMGRALAP-VDLAISNWKSFVAARQSWARLREL 316
              ++ VG +L+   + + G +IA++++ GRA+ P V L++ + + +  A+ S   + ++
Sbjct: 388 NIGMIIVGVYLISNGDLTMGGLIAATMLSGRAIGPLVQLSLLSTR-YNQAKSSMTIIEQV 446

Query: 317 FA---QMPANAAAMALPKPEKELRVENVTIVPPGERKPTVTGLGFVVTAGNALGIIGPSG 373
            +   +       +  P  + ++ ++ VT   P     +V  L   +  G  + IIG  G
Sbjct: 447 MSMPDEQEEGKRYIHRPIIQGKIELDRVTFHYPNSPIASVRDLSLTIHPGEKVAIIGRIG 506

Query: 374 SGKSTLARILTGAWMPAAGKVRLDGASFDQWDRETLGRHIGYLPQGVELFDGTIGENISR 433
           SGK+TL R++ G + P  G VR+D     Q     + R+IG +PQ   LF G+I +NI+ 
Sbjct: 507 SGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRDNITL 566

Query: 434 FDDNPDPEAIIAAARAAGAHELILRFEKGYDSDIGEAGSTLSAGQRQRIGLARALYGDPF 493
                D   ++ AA  AG      +   G +  +GE G  LS GQRQ + +ARA  G P 
Sbjct: 567 GRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVGEGGMLLSGGQRQSVSIARAFLGRPP 626

Query: 494 IVVLDEPNANLDAEGEAAVVKAITSVKARGGIAVVVAHRPSAIGAVDYILMMEDGRMKAF 553
           ++++DEP + +D   E  + + ++ +K    + +++ H+ S +  VD +++ME G + A 
Sbjct: 627 VLLMDEPTSAMDNRSEMHIKQQLSQLKPSETL-ILITHKTSMLDVVDRVIVMEKGCIIAD 685

Query: 554 GPRDEVLS 561
           GP+ EVL+
Sbjct: 686 GPKHEVLN 693