Pairwise Alignments

Query, 615 a.a., rhizobicin secretion from Agrobacterium fabrum C58

Subject, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  204 bits (519), Expect = 1e-56
 Identities = 147/536 (27%), Positives = 251/536 (46%), Gaps = 4/536 (0%)

Query: 29  VALVSGVVNILALTSPLFMLQVYDRVLASGSLPTLVGLALLALGLYGFQCLLDIIRARVL 88
           + L S V+ ILAL SPLF   V D+VL   +  TL  L    +     + +L  +R    
Sbjct: 164 ILLFSFVLQILALISPLFFQVVMDKVLVHQAWSTLDVLVFGLVITGVIEVVLRGLREYQY 223

Query: 89  IRIGEDFDMRYSGRVHDAVVRLPLV---NRMPGDGLQPLRDLDNVRGFLSGTGPTAFFDL 145
                  D++   ++   +  LPL+   +R  G  +  +R+LD +R FL+G+  T   +L
Sbjct: 224 AHTANRIDIQLGLKLVQHLFGLPLMFFKSRQVGAIVTRVRELDTIREFLTGSMFTLTVEL 283

Query: 146 PWMPLYLGLCFLFHVWIGVTALAGAVLLVSLTILTNIFSQKPIRDTMVENMARNRQLEAS 205
            +M ++L +  L    +    +A     V L        Q  I        A    L  +
Sbjct: 284 LFMFVFLYVMSLLSAPLTGLFIATVPCYVLLAWWLTPRMQAAIEKQFSHAAANTSFLTET 343

Query: 206 RRNAEVVQAMGLGRRLGKRWQSSNEAYLAANRKAGDVAGGLGNLAKSLRVVLQSAILAVG 265
              +E ++++ +  R  +RW    E  +        +     +L + L+ +   AIL +G
Sbjct: 344 VAGSETLKSLAVEPRFIRRWDEQTEKMVTTGYDVQQLNNRSNHLVQLLQKITSVAILWLG 403

Query: 266 AWLVIRQEASGGVMIASSIMMGRALAPVDLAISNWKSFVAARQSWARLRELFAQMPANAA 325
           A  V+  E + G +IA ++M      P+   +  W  F+  R +  +L ++         
Sbjct: 404 ATEVLSLEMTIGQLIAFNMMTNHIAQPLARMVELWGQFIQTRVAIEKLGDMLNLPVEQHT 463

Query: 326 AMALPKPEKELRVENVTIVPPGERKPTVTGLGFVVTAGNALGIIGPSGSGKSTLARILTG 385
                     +  +N+      +  PT+  L   + AG  LG++G SGSGKSTLAR+L  
Sbjct: 464 GSDNVTISGAISFKNILFRYQPDIPPTINDLSLDIRAGETLGVVGTSGSGKSTLARLLLR 523

Query: 386 AWMPAAGKVRLDGASFDQWDRETLGRHIGYLPQGVELFDGTIGENISRFDDNPDPEAIIA 445
            + P  G + +DG   +  + + L + +G + Q   LF  ++ ENI++       E II 
Sbjct: 524 LYSPEQGSITIDGIPLNHINVQQLRQRVGVVLQENFLFHKSVSENIAQSKPEASLEEIIE 583

Query: 446 AARAAGAHELILRFEKGYDSDIGEAGSTLSAGQRQRIGLARALYGDPFIVVLDEPNANLD 505
           AA+ +GAH+ IL+   GYD+ + E G +LS GQRQR+ +AR L  DP +++LDE  + LD
Sbjct: 584 AAKLSGAHDFILKLPMGYDTVLAEGGQSLSGGQRQRLAIARTLLSDPKVLILDEATSALD 643

Query: 506 AEGEAAVVKAITSVKARGGIAVVVAHRPSAIGAVDYILMMEDGRMKAFGPRDEVLS 561
            E +A +   + S+ ARG   + +AHR S +   D I+++  G +   G   ++L+
Sbjct: 644 DESQAVIQANMASI-ARGRTVITIAHRLSTVRDCDRIIVLHQGTIVEQGSHQQLLA 698