Pairwise Alignments

Query, 615 a.a., rhizobicin secretion from Agrobacterium fabrum C58

Subject, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  195 bits (496), Expect = 5e-54
 Identities = 149/548 (27%), Positives = 254/548 (46%), Gaps = 12/548 (2%)

Query: 23  KSTFLGVALVSGVVNILALTSPLFMLQVYDRVLASGSLPTLVGLALLALGLYGFQCLLDI 82
           KS    V L +  + I AL SP+    V D+VL   SL +L  LAL  L L   +     
Sbjct: 164 KSQLRDVFLYAIALQIFALVSPMLFENVIDKVLVGRSLSSLHVLALAMLALAIAEPAYSY 223

Query: 83  IRARVLIRIGEDFDMRYSGRVHDAVVRLPLV---NRMPGDGLQPLRDLDNVRGFLSGTGP 139
           +R  V   +    +   SGR++  +V LPL     R  G  +  +R++  +R FL+G+  
Sbjct: 224 LRNTVFGHLASQVNAELSGRLYRHLVGLPLTYFKQRQTGQIIARVREMAQIRQFLTGSTL 283

Query: 140 TAFFDLPWMPLYLGLCFLFHVWIGVTALAGAVLLVSLTILTNIFSQKPIRDTMVENMARN 199
               DL ++ ++L + F +   +    +   V+   L ++     +K +      +    
Sbjct: 284 MLLLDLIFVTVFLAVMFHYASTLTWLVIGSLVIYFVLWLIAGPLIRKKVESEYESDANAT 343

Query: 200 RQLEASRRNAEVVQAMGLGRRLGKRWQSSNEAYLAAN---RKAGDVAGGLGNLAKSLRVV 256
             L  +    E ++      R  ++WQ      L  +   +K+G +AG    L + L   
Sbjct: 344 TFLTEAVTGIETIKTTATEHRFLEQWQRILSQQLNRSFDAQKSGLIAGQAIALVQKLTAA 403

Query: 257 LQSAILAVGAWLVIRQEASGGVMIASSIMMGRALAPVDLAISNWKSFVAARQSWARLREL 316
           L   +L  G   V++ E + G ++A +++ G    PV      W+ F     +  R+ ++
Sbjct: 404 L---LLWWGVSAVLKGEITPGQLVAFNMLAGHVTQPVLRLAQIWQDFQHTLIALRRVGDI 460

Query: 317 FAQMPANAAAMALPKPEKELRVE--NVTIVPPGERKPTVTGLGFVVTAGNALGIIGPSGS 374
             +   N+       PE +  +E  N+      +    +  L   +  G  +G+ GPSGS
Sbjct: 461 LDEPRENSKQGLASVPELDGGIEFSNIRFRYHQDAPEVLANLSLKIKPGQFIGVTGPSGS 520

Query: 375 GKSTLARILTGAWMPAAGKVRLDGASFDQWDRETLGRHIGYLPQGVELFDGTIGENISRF 434
           GKSTL R+L   ++P  G+V +DG      D  +L R++  + Q   LF G++ +NI   
Sbjct: 521 GKSTLTRLLQRLYVPQHGQVLVDGMDLAIADPVSLRRNMSVVLQESILFSGSVADNIRLC 580

Query: 435 DDNPDPEAIIAAARAAGAHELILRFEKGYDSDIGEAGSTLSAGQRQRIGLARALYGDPFI 494
                 E I  AA+ AGA   I     G++  +GE G+ LS GQRQRI LARAL  +P I
Sbjct: 581 KPQASDEEIRHAAQLAGALAFIEGLPHGFNQPVGEKGAALSGGQRQRIALARALLVNPRI 640

Query: 495 VVLDEPNANLDAEGEAAVVKAITSVKARGGIAVVVAHRPSAIGAVDYILMMEDGRMKAFG 554
           ++LDE  + LD   EA+++  +  +  RG   + +AHR + I   D I +++ G++   G
Sbjct: 641 LLLDEATSALDYNSEASIMSNMDEI-CRGRTVISIAHRLNTIRHADNIFVLDKGQVAESG 699

Query: 555 PRDEVLSK 562
             +E+L++
Sbjct: 700 THEELLAQ 707