Pairwise Alignments

Query, 272 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  175 bits (444), Expect = 9e-49
 Identities = 106/258 (41%), Positives = 143/258 (55%), Gaps = 2/258 (0%)

Query: 14  LIALLLIT-AITGL-FWTPYDPMKLGFASRLAAPGAGHLLGTDEFGRDVLSRLMVGARAS 71
           L  L+LIT A+  L  ++ Y      + +  A P A H  GTD  GRD+  R +VG R S
Sbjct: 43  LFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEHWFGTDALGRDLFVRTLVGGRIS 102

Query: 72  VWIGFLTVSFATICGTLIGLVSGYARGWVDGVIMAINNALLAFPGILLALGLLAVFGANQ 131
           + +G +    A + GTL G  SG+  G  D V+M I   L A P + L + L+  FG N 
Sbjct: 103 LMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAIPFMFLVIVLVTFFGRNI 162

Query: 132 YGIIFALGIAYTPSMARVVRGAVLSLREREFIEASLVMGNGEIYTMFRHILPNCIAPITV 191
             I  A+G      MAR+VRG  LSLR +EFIEA+ V G  +   + RHI+PN +  + V
Sbjct: 163 VLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVPNVLGIVAV 222

Query: 192 LATSMFGWAILSESALSFLGLGVPPPAPTWGNMLAAGRPFIQQAVWLGLFPGLCIALTLL 251
            +T +    IL+ES LSFLGLGV  P  +WG +L  G   ++ A+W  LFP   + LTL 
Sbjct: 223 YSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEVAIWQLLFPAAFMVLTLF 282

Query: 252 GINLLGDALRDRLDPRMR 269
             N +GD LRD LDP+ R
Sbjct: 283 CFNYVGDGLRDALDPKDR 300