Pairwise Alignments

Query, 544 a.a., peptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  394 bits (1011), Expect = e-114
 Identities = 216/511 (42%), Positives = 314/511 (61%), Gaps = 8/511 (1%)

Query: 16  VAGSGHRVVKDVSFDIAPGEIFGIVGESGSGKTLATRALISLLPPAIA-VTGGSVIYKGQ 74
           +AG    V + VS  IA GE   +VGESGSGK++   A++ LLP   A    GS+ +   
Sbjct: 17  IAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSAHYLSGSIHFGDV 76

Query: 75  DVMSLPARELRRLRGAEIGVVFQEPMTSLNPSMTIGRQLEEGLILHTKLSPEERREKILE 134
           D +    R LR +RG  IG++FQEPM SLNP   IG+QL E L +H  L      +K +E
Sbjct: 77  DTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRGLRATAAEQKAIE 136

Query: 135 MLRRVGIRDPEGALAAYPHEFSGGMRQRIMLASVMLLKPALLIADEPTTALDAVIQRDVM 194
            L +VGIR PE  + AYPHE SGG RQR+M+A  ++ +P LLIADEPTTALD  +Q  ++
Sbjct: 137 WLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTTALDVSVQAQIL 196

Query: 195 ELMVELTRAEGTAVLLISHDLPMVARYTSRIVVMEKGAIVEQGRTEDLLDAPRHPYTKKL 254
           +L+  L +  G A+L I+HDL +V R   R+ VM+ G +VE      L  AP HPYT++L
Sbjct: 197 DLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLFAAPAHPYTQQL 256

Query: 255 LSSLPFRGEPRSIDTSKAPMVSARGIVVDYAGRKSLLKKAKPK-RALHGVSIDIHEGEVV 313
           +++ P RG P         ++ A  + V +  +    ++ +   +A+  +S  + +G+ +
Sbjct: 257 INADP-RGVPVPTAMDAPTLLQAEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSL 315

Query: 314 ALVGGSGSGKTTLGRTIAGLVKESEGHIRFQGRE----RNEDWNDYRLNCQMVFQDPYSS 369
            LVG SGSGK+T G  I  L+  S+G IRF G++    +  +   YR   Q+VFQDPYS+
Sbjct: 316 GLVGESGSGKSTTGMAILKLL-ASQGAIRFAGQDLQALKRREMLPYRSKMQVVFQDPYSA 374

Query: 370 LDPRMTIQALVEEALRLVPGLDQAAKRKRALETLEEVGLGVDYAGRYPHELSGGQRQRVA 429
           L+PRM++  ++ E LR+   L+           ++EVGL VD   RYP+E SGGQRQR+A
Sbjct: 375 LNPRMSVAQVIGEGLRVHSQLNDDEIDHAICAVMQEVGLDVDTRHRYPNEFSGGQRQRIA 434

Query: 430 IARAIARRPRFLIADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLFISHDLGVVEQVADR 489
           IARA+  +P F++ DEP S+LD TV+AQVLDL  DLQ++Y  + LFISHDL V+  +   
Sbjct: 435 IARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHH 494

Query: 490 VVVMQDGRIIEEGDRDTIFDSPREAYTRRLL 520
            +VM+ G I+E G+  ++F++P   YT++L+
Sbjct: 495 TIVMKAGEIVEHGETQSLFENPSHPYTQQLV 525



 Score =  165 bits (418), Expect = 4e-45
 Identities = 98/236 (41%), Positives = 137/236 (58%), Gaps = 14/236 (5%)

Query: 302 GVSIDIHEGEVVALVGGSGSGKTTLGRTIAGLVKESEGHIRFQGRERNEDWNDYRLNCQ- 360
           GVS+ I  GE +ALVG SGSGK+     I  L+ +   H    G     D +  R + + 
Sbjct: 27  GVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSAHY-LSGSIHFGDVDTLRCSERA 85

Query: 361 ----------MVFQDPYSSLDPRMTIQALVEEALRLVPGLDQAAKRKRALETLEEVGLGV 410
                     M+FQ+P  SL+P   I   + E L +  GL   A  ++A+E L +VG+  
Sbjct: 86  LRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRGLRATAAEQKAIEWLGKVGIRH 145

Query: 411 DYA--GRYPHELSGGQRQRVAIARAIARRPRFLIADEPVSALDVTVRAQVLDLFSDLQKR 468
                  YPHELSGG+RQRV IA A+   P  LIADEP +ALDV+V+AQ+LDL   LQ+ 
Sbjct: 146 PEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTTALDVSVQAQILDLLKSLQQE 205

Query: 469 YGFSCLFISHDLGVVEQVADRVVVMQDGRIIEEGDRDTIFDSPREAYTRRLLSAIP 524
            G + LFI+HDL +V ++ADRV VMQ G+++E     T+F +P   YT++L++A P
Sbjct: 206 LGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLFAAPAHPYTQQLINADP 261