Pairwise Alignments

Query, 544 a.a., peptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  402 bits (1033), Expect = e-116
 Identities = 220/558 (39%), Positives = 329/558 (58%), Gaps = 38/558 (6%)

Query: 5   TLLTVRGLSLEVAGSG--HRVVKDVSFDIAPGEIFGIVGESGSGKTLATRALISLLPPAI 62
           +LL V+ L +E       H  VK ++ DI  GEI G+VGESG+GK+    A+I LL P  
Sbjct: 2   SLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPG 61

Query: 63  AVTGGSVIYKGQDVMSLPARELRRLRGAEIGVVFQEPMTSLNPSMTIGRQLEEGLILHTK 122
            + GG V   G+ +  L  + +R +RG++IG +FQ+PMTSLNP  T+  QL E +  + +
Sbjct: 62  TIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQ 121

Query: 123 LSPEERREKILEMLRRVGIRDPEGALAAYPHEFSGGMRQRIMLASVMLLKPALLIADEPT 182
           +S EE  ++ L ++++VGI  PE  L  YPH+FSGGMRQR+++A  +  +P L+IADEPT
Sbjct: 122 VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181

Query: 183 TALDAVIQRDVMELMVELTRAEGTAVLLISHDLPMVARYTSRIVVMEKGAIVEQGRTEDL 242
           TALD  IQ  ++ L+ EL +      +L++HD+ +V+  T R+ VM +G +VE G T  +
Sbjct: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241

Query: 243 LDAPRHPYTKKLLSSLP-----------------------------FRGEPRSIDTSKAP 273
           L  P HPYT+ L+S++P                             + G+ +       P
Sbjct: 242 LGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTGP 301

Query: 274 MVSARGIVVDYAGRKSLLKKAKPK-RALHGVSIDIHEGEVVALVGGSGSGKTTLGRTIAG 332
           ++    + + +  + SL +  +   +A + VS  +HEGE   LVG SGSGK+T+ R IAG
Sbjct: 302 LLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAG 361

Query: 333 LVKESEGHIRFQGRE-----RNEDWNDYRLNCQMVFQDPYSSLDPRMTIQALVEEALRLV 387
           L + + G + F+G +        +    R   QMVFQ+PY+S++PRM I  ++ E +R  
Sbjct: 362 LYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFH 421

Query: 388 P-GLDQAAKRKRALETLEEVGLGVDYAGRYPHELSGGQRQRVAIARAIARRPRFLIADEP 446
                ++  R+   + LE VGLG     +YPHE SGGQRQR++IARA+A RPR LI DEP
Sbjct: 422 KLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEP 481

Query: 447 VSALDVTVRAQVLDLFSDLQKRYGFSCLFISHDLGVVEQVADRVVVMQDGRIIEEGDRDT 506
            SALDV+V+AQ+L+L  DLQ     + LFISHDL V+ Q+ DRV VMQ G ++E    + 
Sbjct: 482 TSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQ 541

Query: 507 IFDSPREAYTRRLLSAIP 524
           +F  P+  Y+++L+S +P
Sbjct: 542 LFTDPQHEYSKKLISLMP 559



 Score =  155 bits (391), Expect = 5e-42
 Identities = 87/266 (32%), Positives = 148/266 (55%), Gaps = 17/266 (6%)

Query: 274 MVSARGIVVDYAGRKSLLKKAKPKRALHGVSIDIHEGEVVALVGGSGSGKTTLGRTIAGL 333
           ++  + + ++Y  R  +        A+  +++DI  GE+V +VG SG+GK+T+G  +  L
Sbjct: 3   LLEVKNLRIEYPSRHGV------HAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDL 56

Query: 334 VKE----SEGHIRFQGRERN----EDWNDYR-LNCQMVFQDPYSSLDPRMTIQALVEEAL 384
           +      + G +   G + +    +   + R      +FQDP +SL+P  T++  + E +
Sbjct: 57  LSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETI 116

Query: 385 RLVPGLDQAAKRKRALETLEEVGLGV--DYAGRYPHELSGGQRQRVAIARAIARRPRFLI 442
                +      +RAL  +++VG+    +   +YPH+ SGG RQRV IA A+A  P  +I
Sbjct: 117 HANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLII 176

Query: 443 ADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLFISHDLGVVEQVADRVVVMQDGRIIEEG 502
           ADEP +ALDV+++ Q+L+L  +L K+    C+ ++HD+GVV  V DRV VM  G ++E G
Sbjct: 177 ADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFG 236

Query: 503 DRDTIFDSPREAYTRRLLSAIPALDQ 528
               +  +P   YTR L+SA+P  D+
Sbjct: 237 PTAKVLGTPEHPYTRSLISAVPRSDR 262