Pairwise Alignments

Query, 544 a.a., peptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 556 a.a., ABC transporter for D-Raffinose, ATPase component (from data) from Sinorhizobium meliloti 1021

 Score =  395 bits (1015), Expect = e-114
 Identities = 221/520 (42%), Positives = 317/520 (60%), Gaps = 11/520 (2%)

Query: 12  LSLEVAGSGHRVVKDVSFDIAPGEIFGIVGESGSGKTLATRALISLLPPAIAVTGGSVI- 70
           +S +V     + VKDVSF +  GE   IVGESGSGK++  R ++ LL     +   + I 
Sbjct: 33  VSFKVENGTVQAVKDVSFQLYRGETVAIVGESGSGKSVTARTVMGLLSKRATIAPQARIE 92

Query: 71  YKGQDVMSLPARELRRLRGAEIGVVFQEPMTSLNPSMTIGRQLEEGLILHTKLSPEERRE 130
           Y G+DV+    RE R LRG  I ++FQEPM+SLNP  TIG Q+ E +  H ++S     E
Sbjct: 93  YDGRDVLKFSKRERRALRGDRISMIFQEPMSSLNPVYTIGSQIIEAIRAHRRVSRRAAAE 152

Query: 131 KILEMLRRVGIRDPEGALAAYPHEFSGGMRQRIMLASVMLLKPALLIADEPTTALDAVIQ 190
           + LE+LR V I DPE  L  YPH+ SGG RQR+M+A  +   P +LIADEPTTALD  +Q
Sbjct: 153 RALELLRHVQIPDPEARLNQYPHQLSGGQRQRVMIAMALANDPDVLIADEPTTALDVTVQ 212

Query: 191 RDVMELMVELTRAEGTAVLLISHDLPMVARYTSRIVVMEKGAIVEQGRTEDLLDAPRHPY 250
             ++ L+ +L +  G AV+LI+HDL +V +++  + VM+ G + E   TE L   P+H Y
Sbjct: 213 AQILNLIRKLQQELGMAVILITHDLTVVRQFSDYVYVMQLGEVKEHNTTEALFADPQHAY 272

Query: 251 TKKLLSSLPFRGEPRSIDTSKAPMVSARGIVVDYAGRKSLLKKAKPKR--ALHGVSIDIH 308
           T++LLSS P  G    +      ++  R + V +  +K    + + K   A+ G+S+++ 
Sbjct: 273 TRRLLSSEP-SGSANPLPDDAPILLDGRNVRVSFTLKKGGFFRPEFKELVAVDGLSLNLR 331

Query: 309 EGEVVALVGGSGSGKTTLGRTIAGLVKESEGHIRFQGR----ERNEDWNDYRLNCQMVFQ 364
             E + LVG SGSGKTT G+ +  L+    G I F+G     +  +     R   Q+VFQ
Sbjct: 332 RHETLGLVGESGSGKTTFGQALIRLLNTDGGEIYFEGEPIHDKDRKGMRPLRSKIQIVFQ 391

Query: 365 DPYSSLDPRMTIQALVEEALRLVPGLDQAAK--RKRALETLEEVGLGVDYAGRYPHELSG 422
           DP+SSL+PRM++  ++EE L +V G+ +  K   KR  + L   G+  +   R+PHE SG
Sbjct: 392 DPFSSLNPRMSVGQIIEEGL-IVNGMGENRKDRLKRVEDALVSAGMPSNILSRFPHEFSG 450

Query: 423 GQRQRVAIARAIARRPRFLIADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLFISHDLGV 482
           GQRQR+AIARA+A  P F++ DEP SALD++V+AQ+++L   LQ   G S L ISHDL V
Sbjct: 451 GQRQRIAIARAVALEPEFILLDEPTSALDLSVQAQIIELLRRLQDERGLSYLVISHDLKV 510

Query: 483 VEQVADRVVVMQDGRIIEEGDRDTIFDSPREAYTRRLLSA 522
           V  +  RVVVMQDG+I+EEG    + ++P+ AYT RL+ A
Sbjct: 511 VRALCHRVVVMQDGKIVEEGPVSEVLNNPKTAYTERLVKA 550



 Score =  180 bits (456), Expect = 1e-49
 Identities = 117/290 (40%), Positives = 162/290 (55%), Gaps = 25/290 (8%)

Query: 256 SSLPFRGEPRSIDTS-KAPMVSARGIVVDYAGRKSLLKKAKPKRALHGVSIDIHEGEVVA 314
           S +P   E R  D   + P++ AR + V +      ++  K       VS  ++ GE VA
Sbjct: 6   SIVPAPEERRDRDMKDERPVIDARKVAVSFKVENGTVQAVKD------VSFQLYRGETVA 59

Query: 315 LVGGSGSGKTTLGRTIAGLVK-----------ESEGH--IRFQGRERNEDWNDYRLNCQM 361
           +VG SGSGK+   RT+ GL+            E +G   ++F  RER     D      M
Sbjct: 60  IVGESGSGKSVTARTVMGLLSKRATIAPQARIEYDGRDVLKFSKRERRALRGD---RISM 116

Query: 362 VFQDPYSSLDPRMTIQALVEEALRLVPGLDQAAKRKRALETLEEVGLGVDYA--GRYPHE 419
           +FQ+P SSL+P  TI + + EA+R    + + A  +RALE L  V +    A   +YPH+
Sbjct: 117 IFQEPMSSLNPVYTIGSQIIEAIRAHRRVSRRAAAERALELLRHVQIPDPEARLNQYPHQ 176

Query: 420 LSGGQRQRVAIARAIARRPRFLIADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLFISHD 479
           LSGGQRQRV IA A+A  P  LIADEP +ALDVTV+AQ+L+L   LQ+  G + + I+HD
Sbjct: 177 LSGGQRQRVMIAMALANDPDVLIADEPTTALDVTVQAQILNLIRKLQQELGMAVILITHD 236

Query: 480 LGVVEQVADRVVVMQDGRIIEEGDRDTIFDSPREAYTRRLLSAIPALDQN 529
           L VV Q +D V VMQ G + E    + +F  P+ AYTRRLLS+ P+   N
Sbjct: 237 LTVVRQFSDYVYVMQLGEVKEHNTTEALFADPQHAYTRRLLSSEPSGSAN 286