Pairwise Alignments

Query, 544 a.a., peptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 557 a.a., oligopeptidemurein peptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  377 bits (967), Expect = e-109
 Identities = 211/543 (38%), Positives = 319/543 (58%), Gaps = 24/543 (4%)

Query: 6   LLTVRGLSLE-VAGSGHR-VVKDVSFDIAPGEIFGIVGESGSGKTLATRALISLLPPAIA 63
           LL V  L L  V+GS    ++ DVSF++  GEI GI+GESG+GK+    A++ LL P   
Sbjct: 10  LLRVENLGLRHVSGSATTPILSDVSFELGRGEILGIIGESGAGKSTVGNAILGLLSPEFQ 69

Query: 64  VTGGSVIYKGQDVMSLPARELRRLRGAEIGVVFQEPMTSLNPSMTIGRQLEEG-LILHTK 122
            T G++ + G+ +  + A E   LRG  I  +FQ+   SL+P M++G Q+EE  L L + 
Sbjct: 70  QTSGTIEFDGKAIDGMTADERETLRGRRISAIFQDHTASLDPLMSVGAQVEETCLALDSS 129

Query: 123 LSPEERREKILEMLRRVGIRDPEGALAAYPHEFSGGMRQRIMLASVMLLKPALLIADEPT 182
           LS  E R + +++L RVGI +PE     YPH+FSGG RQR+++A  +   P ++IADEPT
Sbjct: 130 LSRREARARAIDLLARVGIPEPERRYRNYPHQFSGGQRQRVVIAIALAGSPDIIIADEPT 189

Query: 183 TALDAVIQRDVMELMVELTRAEGTAVLLISHDLPMVARYTSRIVVMEKGAIVEQGRTEDL 242
           +ALDA +Q+ V+EL+  L    G +++L++HD+ +++  T+R++VM KG +VE  RT  +
Sbjct: 190 SALDATVQKQVLELLKILVDETGVSIILVTHDMGVISEITNRVLVMRKGQVVEADRTTAI 249

Query: 243 LDAPRHPYTKKLLSSLP---------------FRGEPRSIDTSKAPMVSARGIVVDYA-- 285
           LD PRH YTKKLL+++P                + +  +ID+ + P++ A G+   +A  
Sbjct: 250 LDQPRHDYTKKLLAAVPRLRIPTRTAKAEDNGRQADSPAIDSDQNPLLIAEGLSKQFAPQ 309

Query: 286 GRKSLLKKAKPKRALHGVSIDIHEGEVVALVGGSGSGKTTLGRTIAGLVKESEGHIRFQG 345
           G    + + KP+  L  V I +  G +  +VG SGSGKTT GR +AGL     G I    
Sbjct: 310 GFAWGIGRGKPRFGLRDVGIRLARGSITGIVGESGSGKTTFGRILAGLDTAPTGRITIGE 369

Query: 346 RERNEDWNDYRL----NCQMVFQDPYSSLDPRMTIQALVEEALRLVPGLDQAAKRKRALE 401
              +   +  R       QM+FQDP  SL+PRMTI   ++E++R    +    +      
Sbjct: 370 HPFDVSQSGRRSGLLGRVQMIFQDPSVSLNPRMTIGETLDESIRFGARIRSGEEPADLAA 429

Query: 402 TLEEVGLGVDYAGRYPHELSGGQRQRVAIARAIARRPRFLIADEPVSALDVTVRAQVLDL 461
            ++ +GL     GR+PH+LSGGQ+QRV IARA+  RP  ++ADEP SALDV+V+A+++ L
Sbjct: 430 MMDRLGLPRSLLGRHPHQLSGGQKQRVCIARALLARPEIIVADEPTSALDVSVQAEIVQL 489

Query: 462 FSDLQKRYGFSCLFISHDLGVVEQVADRVVVMQDGRIIEEGDRDTIFDSPREAYTRRLLS 521
             D       + +FISHDL +V+ +   V + +DGRI + G  + IF      YTR L++
Sbjct: 490 LKDTIAERAMTMVFISHDLAIVQAMCSSVYIFKDGRIEDFGPTEFIFSRSDNPYTRALIN 549

Query: 522 AIP 524
           A P
Sbjct: 550 ARP 552



 Score =  169 bits (427), Expect = 3e-46
 Identities = 97/241 (40%), Positives = 144/241 (59%), Gaps = 16/241 (6%)

Query: 300 LHGVSIDIHEGEVVALVGGSGSGKTTLGRTIAGLV----KESEGHIRFQGR-------ER 348
           L  VS ++  GE++ ++G SG+GK+T+G  I GL+    +++ G I F G+       + 
Sbjct: 30  LSDVSFELGRGEILGIIGESGAGKSTVGNAILGLLSPEFQQTSGTIEFDGKAIDGMTADE 89

Query: 349 NEDWNDYRLNCQMVFQDPYSSLDPRMTIQALVEEA-LRLVPGLDQAAKRKRALETLEEVG 407
            E     R++   +FQD  +SLDP M++ A VEE  L L   L +   R RA++ L  VG
Sbjct: 90  RETLRGRRISA--IFQDHTASLDPLMSVGAQVEETCLALDSSLSRREARARAIDLLARVG 147

Query: 408 LGVDYAG--RYPHELSGGQRQRVAIARAIARRPRFLIADEPVSALDVTVRAQVLDLFSDL 465
           +         YPH+ SGGQRQRV IA A+A  P  +IADEP SALD TV+ QVL+L   L
Sbjct: 148 IPEPERRYRNYPHQFSGGQRQRVVIAIALAGSPDIIIADEPTSALDATVQKQVLELLKIL 207

Query: 466 QKRYGFSCLFISHDLGVVEQVADRVVVMQDGRIIEEGDRDTIFDSPREAYTRRLLSAIPA 525
               G S + ++HD+GV+ ++ +RV+VM+ G+++E      I D PR  YT++LL+A+P 
Sbjct: 208 VDETGVSIILVTHDMGVISEITNRVLVMRKGQVVEADRTTAILDQPRHDYTKKLLAAVPR 267

Query: 526 L 526
           L
Sbjct: 268 L 268



 Score =  147 bits (372), Expect = 8e-40
 Identities = 91/268 (33%), Positives = 140/268 (52%), Gaps = 17/268 (6%)

Query: 4   NTLLTVRGLSLEVAGSGHRV----------VKDVSFDIAPGEIFGIVGESGSGKTLATRA 53
           N LL   GLS + A  G             ++DV   +A G I GIVGESGSGKT   R 
Sbjct: 294 NPLLIAEGLSKQFAPQGFAWGIGRGKPRFGLRDVGIRLARGSITGIVGESGSGKTTFGRI 353

Query: 54  LISLLPPAIAVTGGSVIYKGQDVMSLPARELRRLRGAEIGVVFQEPMTSLNPSMTIGRQL 113
           L  L     A TG   I +    +S   R    L    + ++FQ+P  SLNP MTIG  L
Sbjct: 354 LAGL---DTAPTGRITIGEHPFDVSQSGRRSGLL--GRVQMIFQDPSVSLNPRMTIGETL 408

Query: 114 EEGLILHTKLSPEERREKILEMLRRVGIRDPEGALAAYPHEFSGGMRQRIMLASVMLLKP 173
           +E +    ++   E    +  M+ R+G+  P   L  +PH+ SGG +QR+ +A  +L +P
Sbjct: 409 DESIRFGARIRSGEEPADLAAMMDRLGL--PRSLLGRHPHQLSGGQKQRVCIARALLARP 466

Query: 174 ALLIADEPTTALDAVIQRDVMELMVELTRAEGTAVLLISHDLPMVARYTSRIVVMEKGAI 233
            +++ADEPT+ALD  +Q ++++L+ +        ++ ISHDL +V    S + + + G I
Sbjct: 467 EIIVADEPTSALDVSVQAEIVQLLKDTIAERAMTMVFISHDLAIVQAMCSSVYIFKDGRI 526

Query: 234 VEQGRTEDLLDAPRHPYTKKLLSSLPFR 261
            + G TE +     +PYT+ L+++ P R
Sbjct: 527 EDFGPTEFIFSRSDNPYTRALINARPQR 554