Pairwise Alignments
Query, 544 a.a., peptide ABC transporter ATPase from Agrobacterium fabrum C58
Subject, 560 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H
Score = 388 bits (996), Expect = e-112
Identities = 209/504 (41%), Positives = 299/504 (59%), Gaps = 9/504 (1%)
Query: 27 VSFDIAPGEIFGIVGESGSGKTLATRALISLLPPAIAVTGGSVIYKGQDVMSLPARELRR 86
+S + EI +VGESGSGK++ A++ LL P+ +TGG ++ +G D++ L +R
Sbjct: 35 ISLTVGADEIVCLVGESGSGKSMTAGAIMRLLGPSTPITGGRILLEGVDLLGLSEAAMRA 94
Query: 87 LRGAEIGVVFQEPMTSLNPSMTIGRQLEEGLILHTKLSPEERREKILEMLRRVGIRDPEG 146
+RGA +G++FQEPMT+LNP TIG Q+ E H L E ++L++L V I DP
Sbjct: 95 VRGARVGMIFQEPMTALNPLHTIGDQIAETFRTHGTLGRAEIERRVLDLLAEVLIPDPVA 154
Query: 147 ALAAYPHEFSGGMRQRIMLASVMLLKPALLIADEPTTALDAVIQRDVMELMVELTRAEGT 206
A AYPHE SGG RQR M+A + L+PALLIADEPTTALD Q ++ L+ +L R +GT
Sbjct: 155 AAKAYPHELSGGQRQRAMIAMALALEPALLIADEPTTALDVTTQAQILALIRDLQRRKGT 214
Query: 207 AVLLISHDLPMVARYTSRIVVMEKGAIVEQGRTEDLLDAPRHPYTKKLLSSLP--FRGEP 264
VL ++HD +VA R+ VM G +VE+G +L+ P HPYT+ L++++P P
Sbjct: 215 GVLFVTHDFGVVAEIADRVAVMRGGEVVEEGAAAQVLNHPLHPYTRALIAAVPPLVPAPP 274
Query: 265 RSIDTSKAPMVSARGIVVDYAGRKSLLKKAKPKRALHGVSIDIHEGEVVALVGGSGSGKT 324
R + + P++ G+ Y + + A+ VS + G + +VG SGSGK+
Sbjct: 275 RPV--TGPPLLRVEGLSKTYRSGGFFGRGGRVTHAVKDVSFTLRRGATLGIVGESGSGKS 332
Query: 325 TLGRTIAGLVKESEGHIRFQGRE----RNEDWNDYRLNCQMVFQDPYSSLDPRMTIQALV 380
TL R + L+ G I + + DW+ QMVFQDPY SL+PR + LV
Sbjct: 333 TLARCVVRLLTSESGSIHLDDIDLSALTDNDWHRESRRIQMVFQDPYGSLNPRRRVGELV 392
Query: 381 EEALRLVPGLDQAAKRKRALETLEEVGLGVDYAGRYPHELSGGQRQRVAIARAIARRPRF 440
+ +V G + R E VGL R+PHE SGGQRQR+ +ARA+A P
Sbjct: 393 AQG-PIVRGAPRREVEARVRELFALVGLDPKAVDRFPHEFSGGQRQRIGLARALALDPDV 451
Query: 441 LIADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLFISHDLGVVEQVADRVVVMQDGRIIE 500
L+ADE VSALDV+V+AQVL L +DL++R S LFI+HDL V Q+AD ++VM+DG ++E
Sbjct: 452 LVADEAVSALDVSVQAQVLALLADLRERLNLSVLFITHDLRVAGQIADDILVMKDGAVVE 511
Query: 501 EGDRDTIFDSPREAYTRRLLSAIP 524
G +F P YT+ L++A+P
Sbjct: 512 AGPTARVFADPHHPYTKTLMAAVP 535
Score = 172 bits (437), Expect = 2e-47
Identities = 111/265 (41%), Positives = 150/265 (56%), Gaps = 13/265 (4%)
Query: 273 PMVSARGIVVDYAGRKSLLKKAKPKRALHGVSIDIHEGEVVALVGGSGSGKTTLGRTIAG 332
P+ S R I+ D R +L K A AL+G+S+ + E+V LVG SGSGK+ I
Sbjct: 7 PLASPRLIIDDL--RVALPKSADRPFALNGISLTVGADEIVCLVGESGSGKSMTAGAIMR 64
Query: 333 LVKESE----GHIRFQGRE----RNEDWNDYR-LNCQMVFQDPYSSLDPRMTIQALVEEA 383
L+ S G I +G + R M+FQ+P ++L+P TI + E
Sbjct: 65 LLGPSTPITGGRILLEGVDLLGLSEAAMRAVRGARVGMIFQEPMTALNPLHTIGDQIAET 124
Query: 384 LRLVPGLDQAAKRKRALETLEEVGLG--VDYAGRYPHELSGGQRQRVAIARAIARRPRFL 441
R L +A +R L+ L EV + V A YPHELSGGQRQR IA A+A P L
Sbjct: 125 FRTHGTLGRAEIERRVLDLLAEVLIPDPVAAAKAYPHELSGGQRQRAMIAMALALEPALL 184
Query: 442 IADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLFISHDLGVVEQVADRVVVMQDGRIIEE 501
IADEP +ALDVT +AQ+L L DLQ+R G LF++HD GVV ++ADRV VM+ G ++EE
Sbjct: 185 IADEPTTALDVTTQAQILALIRDLQRRKGTGVLFVTHDFGVVAEIADRVAVMRGGEVVEE 244
Query: 502 GDRDTIFDSPREAYTRRLLSAIPAL 526
G + + P YTR L++A+P L
Sbjct: 245 GAAAQVLNHPLHPYTRALIAAVPPL 269
Score = 157 bits (398), Expect = 8e-43
Identities = 105/269 (39%), Positives = 147/269 (54%), Gaps = 16/269 (5%)
Query: 1 MTDNTLLTVRGLSLEVA-----GSGHRV---VKDVSFDIAPGEIFGIVGESGSGKTLATR 52
+T LL V GLS G G RV VKDVSF + G GIVGESGSGK+ R
Sbjct: 277 VTGPPLLRVEGLSKTYRSGGFFGRGGRVTHAVKDVSFTLRRGATLGIVGESGSGKSTLAR 336
Query: 53 ALISLLPPAIAVTGGSVIYKGQDVMSLPARELRRLRGAEIGVVFQEPMTSLNPSMTIGRQ 112
++ LL GS+ D+ +L + R I +VFQ+P SLNP +G
Sbjct: 337 CVVRLLTSE----SGSIHLDDIDLSALTDNDWHR-ESRRIQMVFQDPYGSLNPRRRVGEL 391
Query: 113 LEEGLILHTKLSPEERREKILEMLRRVGIRDPEGALAAYPHEFSGGMRQRIMLASVMLLK 172
+ +G I+ E ++ E+ VG+ DP+ A+ +PHEFSGG RQRI LA + L
Sbjct: 392 VAQGPIVRGA-PRREVEARVRELFALVGL-DPK-AVDRFPHEFSGGQRQRIGLARALALD 448
Query: 173 PALLIADEPTTALDAVIQRDVMELMVELTRAEGTAVLLISHDLPMVARYTSRIVVMEKGA 232
P +L+ADE +ALD +Q V+ L+ +L +VL I+HDL + + I+VM+ GA
Sbjct: 449 PDVLVADEAVSALDVSVQAQVLALLADLRERLNLSVLFITHDLRVAGQIADDILVMKDGA 508
Query: 233 IVEQGRTEDLLDAPRHPYTKKLLSSLPFR 261
+VE G T + P HPYTK L++++P R
Sbjct: 509 VVEAGPTARVFADPHHPYTKTLMAAVPGR 537