Pairwise Alignments

Query, 309 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score =  139 bits (351), Expect = 6e-38
 Identities = 94/300 (31%), Positives = 164/300 (54%), Gaps = 17/300 (5%)

Query: 1   MKKF---IIGAAMSVLLGTAAHAE-TVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQV 56
           MKK    I  A +S  +   A A+ TV + ++  ++ F   +++G    +KEL G  L V
Sbjct: 3   MKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKEL-GYNLIV 61

Query: 57  EDAQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNVD 116
            D+QND +K+ S +++     V AI++NP D+DA +   ++A  +KIP++ ++R      
Sbjct: 62  LDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGA---- 117

Query: 117 SLPDGQAFVASDETVAGTLEAKEVCRLLGGKGNAVIMMGELSNQAARMRTQSAKDVLKTD 176
           S  +  + +ASD  V G +    +   +G     + + G     AAR R +   + +K  
Sbjct: 118 SRGEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGS 177

Query: 177 ECKGISVVEEQTANWQRTQGSDLVTNWLSSGIEFNAVIANNDEMAIGAIQALKAAGKDMK 236
           +   + ++  Q A++ RT+G +++ N L++  +  AV A NDEMA+GA++A++A+G   K
Sbjct: 178 K---MQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASG---K 231

Query: 237 SYVVAGVDATQDALAAMQAGDLDVTVFQDAAGQGKGALDAALKLVKGDKIEKKVYIPFQL 296
           S ++ G D T D +AA++ G L  TV Q     G   ++ A K++KG+K+E   YIP  L
Sbjct: 232 SVMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVE--AYIPVAL 289