Pairwise Alignments

Query, 513 a.a., sugar ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

 Score =  455 bits (1170), Expect = e-132
 Identities = 238/491 (48%), Positives = 336/491 (68%), Gaps = 6/491 (1%)

Query: 23  LLAADGIRKEFPGVVALDDVQFHLKRGTVHALMGENGAGKSTLMKILAGIYQPDNGEIRL 82
           +LA   I K FPGV ALD    ++  G V ALMGENGAGKSTLMK+L GIY  D G I  
Sbjct: 5   ILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEY 64

Query: 83  KGAPIRLDSPLDALENGIAMIHQELNLMAYMTVAENIWIRREPKNRLGFIDHGEMYRRTE 142
           +G P+    P D+   GI++IHQELNL+  +T+AENI++ RE  +  G I   EM+R+ +
Sbjct: 65  QGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRKAD 124

Query: 143 TLLERLGIDLDPETRVGELSVASRQMVEIAKAVSYNSDVLIMDEPTSALTEREVEHLFRI 202
            LL RL +    +T +GELS+  +QMVEIAKA+S+ S V+IMDEPT ALT+ E E LF +
Sbjct: 125 QLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNV 184

Query: 203 IRDLRERGIGIVYITHKMNELFEIADEFSVFRDGKYIGTHASTDVTRDDIIRMMVGREIT 262
           I +LRE+G GIVYI+H++ E+FEI D+ +V RDGK+IG     D   D +I MMVGR++ 
Sbjct: 185 INELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRKLE 244

Query: 263 QMFPKEEVPIGDVVLSVKNLNLDGVFHDVSFDVRAGEILGVAGLVGSGRSNVAETVFGVT 322
           + +P+     GD+ L V  L   GV HDVSF ++ GEILGV+GL+G+GR+ + + ++G  
Sbjct: 245 EQYPRIAAQQGDISLEVIGLTGSGV-HDVSFTLKKGEILGVSGLMGAGRTELMKVIYGAL 303

Query: 323 PASSGTISIDGKPVSIDSPTTAISHRMAFLTEDRKDTGCLLILNILENMQIAVLQDKYVA 382
           P+  G I+++G+ V+  SP   +++ +A+++EDRK  G +L L++ ENM +  L    ++
Sbjct: 304 PSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQ--LS 361

Query: 383 NGFVQENALSE--ACEEMCRKLRVKTPHLYERIENLSGGNQQKVLIGRWMLTKPRILILD 440
            G VQ     E  A ++  R   +KTP   + I NLSGGNQQKV I + ++TKP++LILD
Sbjct: 362 KG-VQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILD 420

Query: 441 EPTRGIDVGAKAEIHKLVCEMARQGVAVIMISSEMPEVLGMSDRVMVMHEGRVTGFLARS 500
           EPTRG+DVGAK EI++L+ +   +G+++I++SSEMPEVLGMSDR++VMHEGR++G    S
Sbjct: 421 EPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMAS 480

Query: 501 EATQVKVMDLA 511
           EA Q K+M  A
Sbjct: 481 EADQEKLMACA 491



 Score = 98.2 bits (243), Expect = 6e-25
 Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 5/224 (2%)

Query: 41  DVQFHLKRGTVHALMGENGAGKSTLMKILAGIYQPDNGEIRLKGAPIRLDSPLDALENGI 100
           DV F LK+G +  + G  GAG++ LMK++ G    + G I L G  +   SP D L NGI
Sbjct: 271 DVSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQDGLANGI 330

Query: 101 AMIHQELN---LMAYMTVAENIWIRREPKNRLGF-IDHGEMYRRTETLLERLGIDLDP-E 155
           A I ++     L+  ++V EN+ +    +   G  I H +     +  +    I     E
Sbjct: 331 AYISEDRKGDGLVLGLSVKENMSLCALDQLSKGVQIRHADEVIAVDDFIRLFNIKTPSRE 390

Query: 156 TRVGELSVASRQMVEIAKAVSYNSDVLIMDEPTSALTEREVEHLFRIIRDLRERGIGIVY 215
             +G LS  ++Q V IAK +     VLI+DEPT  +     + ++++I   +  G+ I+ 
Sbjct: 391 QIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIIL 450

Query: 216 ITHKMNELFEIADEFSVFRDGKYIGTHASTDVTRDDIIRMMVGR 259
           ++ +M E+  ++D   V  +G+  G   +++  ++ ++   VGR
Sbjct: 451 VSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGR 494