Pairwise Alignments

Query, 513 a.a., sugar ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 520 a.a., ABC transporter for L-fucose, ATPase component (from data) from Herbaspirillum seropedicae SmR1

 Score =  488 bits (1256), Expect = e-142
 Identities = 261/511 (51%), Positives = 355/511 (69%), Gaps = 9/511 (1%)

Query: 6   STMAAVRASGAVPNAEFLLAADGIRKEFPGVVALDDVQFHLKRGTVHALMGENGAGKSTL 65
           +T  A  +S +VP    ++A   + K FPGV+ALD+ QF L  G VHALMGENGAGKSTL
Sbjct: 9   TTGVAASSSSSVP----VIALRNVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTL 64

Query: 66  MKILAGIYQPDNGEIRLKGAPIRLDSPLDALENGIAMIHQELNLMAYMTVAENIWIRREP 125
           MKIL+G+YQ D+G+I L G P+ +  P  A   GI +IHQELNLM +++ A+NI+I REP
Sbjct: 65  MKILSGVYQRDSGDILLDGKPVEITEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREP 124

Query: 126 KNRLG-FIDHGEMYRRTETLLERLGIDLDPETRVGELSVASRQMVEIAKAVSYNSDVLIM 184
           +  +G FID  E+ R+   +  R+ +D+DP T VGEL+VA +QMVEIAKA+S++S VLIM
Sbjct: 125 RKAMGLFIDEDELNRQAAAIFARMRLDMDPSTPVGELTVARQQMVEIAKALSFDSRVLIM 184

Query: 185 DEPTSALTEREVEHLFRIIRDLRERGIGIVYITHKMNELFEIADEFSVFRDGKYIGTHAS 244
           DEPT+AL   E+  LFRIIRDL+ +G+GIVYI+HKM+EL +IAD  SV RDGKYI T   
Sbjct: 185 DEPTAALNNAEIAELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPM 244

Query: 245 TDVTRDDIIRMMVGREI--TQMFPKEEVPIGDVVLSVKNLNLDGVFHDVSFDVRAGEILG 302
            + + D II MMVGR +   Q  P  +    DVVL V+ LN      DVSF +R GEILG
Sbjct: 245 QETSMDTIISMMVGRALDGEQRIP-PDTSRNDVVLEVRGLNRGRAIRDVSFTLRKGEILG 303

Query: 303 VAGLVGSGRSNVAETVFGVTPASSGTISIDGKPVSIDSPTTAISHRMAFLTEDRKDTGCL 362
            AGL+G+GR+ VA  +FG  P  +G I I G    I SP  A++H + +L+EDRK  G  
Sbjct: 304 FAGLMGAGRTEVARAIFGADPLEAGEIIIHGGKAVIKSPADAVAHGIGYLSEDRKHFGLA 363

Query: 363 LILNILENMQIAVLQDKYVANGFVQENALSEACEEMCRKLRVKTPHLYERIENLSGGNQQ 422
           + +++  N+ ++ +  ++   GF+ + A+ EA +   R+L +KTP + ++   LSGGNQQ
Sbjct: 364 VGMDVQANIALSSM-GRFTRVGFMDQRAIREAAQMYVRQLAIKTPSVEQQARLLSGGNQQ 422

Query: 423 KVLIGRWMLTKPRILILDEPTRGIDVGAKAEIHKLVCEMARQGVAVIMISSEMPEVLGMS 482
           K++I +W+L    IL  DEPTRGIDVGAK+EI+KL+  +A QG A++MISSE+PEVL MS
Sbjct: 423 KIVIAKWLLRDCDILFFDEPTRGIDVGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMS 482

Query: 483 DRVMVMHEGRVTGFLARSEATQVKVMDLASR 513
            RV+VM EGR+TG LAR++ATQ K+M LA++
Sbjct: 483 HRVLVMCEGRITGELARADATQEKIMQLATQ 513



 Score = 90.1 bits (222), Expect = 2e-22
 Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 5/228 (2%)

Query: 38  ALDDVQFHLKRGTVHALMGENGAGKSTLMKILAGIYQPDNGEIRLKGAPIRLDSPLDALE 97
           A+ DV F L++G +    G  GAG++ + + + G    + GEI + G    + SP DA+ 
Sbjct: 288 AIRDVSFTLRKGEILGFAGLMGAGRTEVARAIFGADPLEAGEIIIHGGKAVIKSPADAVA 347

Query: 98  NGIAMIHQE---LNLMAYMTVAENIWIRREPK-NRLGFIDHGEMYRRTETLLERLGIDLD 153
           +GI  + ++     L   M V  NI +    +  R+GF+D   +    +  + +L I   
Sbjct: 348 HGIGYLSEDRKHFGLAVGMDVQANIALSSMGRFTRVGFMDQRAIREAAQMYVRQLAIKTP 407

Query: 154 P-ETRVGELSVASRQMVEIAKAVSYNSDVLIMDEPTSALTEREVEHLFRIIRDLRERGIG 212
             E +   LS  ++Q + IAK +  + D+L  DEPT  +       +++++  L E+G  
Sbjct: 408 SVEQQARLLSGGNQQKIVIAKWLLRDCDILFFDEPTRGIDVGAKSEIYKLLDALAEQGKA 467

Query: 213 IVYITHKMNELFEIADEFSVFRDGKYIGTHASTDVTRDDIIRMMVGRE 260
           IV I+ ++ E+  ++    V  +G+  G  A  D T++ I+++   RE
Sbjct: 468 IVMISSELPEVLRMSHRVLVMCEGRITGELARADATQEKIMQLATQRE 515