Pairwise Alignments

Query, 578 a.a., sensory methylation accepting chemotaxis protein from Agrobacterium fabrum C58

Subject, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

 Score =  223 bits (569), Expect = 9e-63
 Identities = 137/415 (33%), Positives = 223/415 (53%), Gaps = 29/415 (6%)

Query: 12  SAVLDALSRSQAIIEFDLTGKILKANDNFCKAVGYQPSEIVGRTHSIFLSSEDAASPEYK 71
           S ++ AL R+ A IEFD  GKIL AN  F  A+GY   E++G+ H IF   E   S EY 
Sbjct: 26  SDIVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYA 85

Query: 72  AFWAKLSRGEYDQGQYRRQAKNGDEIWIEASYNPV-FRFGKPYKVVKIATDITVIKRKSA 130
            FW  L++G+  +  + R  K+G  IWIEA+Y PV  R G  YKV+K+A D+T  K  + 
Sbjct: 86  QFWKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITAD 145

Query: 131 EDDGKLAALSRAQAMIEFTPDGKILGANENFLTTLDYTAEEIIGKHHSIFCEPAYAQSQD 190
           +      +L R+ AMI+F PDG I  ANENFL    Y  EEI+GKHH +FC+  + +   
Sbjct: 146 KQAAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYKENP 205

Query: 191 YRDFWKELGRGHFSTGQFMRLGKDNKRVFIQASYNPIIDDRGRVFKVVKFAFDVTDRV-- 248
             +FW+EL RG F +G F R  +  + ++++A+YNPI +D G V +VVKFA DVTD+V  
Sbjct: 206 --NFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLK 263

Query: 249 -HAVEELGAALERLSQCNIRVT-LDKPFVGEFERLRQDFNKSIAEFQKTLENVLGQTGDL 306
            HA +E     ++ S   +RV    +  +     +     +SIA     + ++  Q+  +
Sbjct: 264 AHATKEASQMAQQTSAETVRVAESGREMIDAAATIASGITESIAGANALMTDLSSQSQRI 323

Query: 307 T-------RSSQEVSEASVNLA-------ERSREQAVALEE-------TSAALEEITATV 345
           T       + +++ +  ++N A       E  R  AV  +E       TS A  EI   V
Sbjct: 324 TQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIV 383

Query: 346 RSSTENMKETRKLVQSARASTVASTEVVERTVDAMQRIETASREISQII-GVIDE 399
           + +++  +++ + ++  +A       ++++T   +++I+ A+  + + +  ++DE
Sbjct: 384 KRNSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENVQKTVSNIVDE 438



 Score =  180 bits (457), Expect = 9e-50
 Identities = 126/418 (30%), Positives = 195/418 (46%), Gaps = 47/418 (11%)

Query: 132 DDGKLAALSRAQAMIEFTPDGKILGANENFLTTLDYTAEEIIGKHHSIFCEPAYAQSQDY 191
           D   ++AL R  A IEF P GKIL AN  FL+ + YT EE+IG+HH IFC+P    S +Y
Sbjct: 25  DSDIVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEY 84

Query: 192 RDFWKELGRGHFSTGQFMRLGKDNKRVFIQASYNPIIDDRGRVFKVVKFAFDVTDRVHAV 251
             FWK L +G      F RL KD   ++I+A+Y P+ +  G V+KV+K A DVT      
Sbjct: 85  AQFWKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITA 144

Query: 252 EELGAALERLSQCNIRVTLD--------------------KPFVGEFERLRQD--FNKSI 289
           ++  A    L + +  +  +                    +  VG+  R+  D  F K  
Sbjct: 145 DKQAAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYKEN 204

Query: 290 AEFQKTL---ENVLGQTGDLTRSSQEV-SEASVN--------------LAERSREQAVAL 331
             F + L   E   G     TR  Q++  EA+ N               A    +Q +  
Sbjct: 205 PNFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKA 264

Query: 332 EETSAALEEITATVRSSTENMKETRKLVQSARASTVASTEVVERTVDAMQRIETASREIS 391
             T  A +    T   +    +  R+++ +A       TE +      M  + + S+ I+
Sbjct: 265 HATKEASQMAQQTSAETVRVAESGREMIDAAATIASGITESIAGANALMTDLSSQSQRIT 324

Query: 392 QIIGVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQEVRELAQRSASAAKEIKALIN 451
           QI+  I++IA QTNLLALNA +EAARAG+ G+GFAVVA EVR LA  ++ A  EI  ++ 
Sbjct: 325 QIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIVK 384

Query: 452 NSGTEVLEGVRLVGETGEALKQIDSLVRHIDGNVDTISKAADEQAAGISEINKAVNRL 509
            +        +L  ++G+ ++QI + V   +  +       ++       + K V+ +
Sbjct: 385 RNS-------QLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENVQKTVSNI 435