Pairwise Alignments

Query, 578 a.a., sensory methylation accepting chemotaxis protein from Agrobacterium fabrum C58

Subject, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  353 bits (906), Expect = e-101
 Identities = 204/545 (37%), Positives = 318/545 (58%), Gaps = 24/545 (4%)

Query: 13  AVLDALSRSQAIIEFDLTGKILKANDNFCKAVGYQPSEIVG-------RTH---SIFLSS 62
           A +  +    A++E +  G I  A+D F          +VG       RTH   S+    
Sbjct: 67  AFVQVIREHLALLECEPNGTICYASDAFAHLCRVSAEAMVGADFANLWRTHQQPSVQRLL 126

Query: 63  EDAASPEYKAFWAKLSRGEYDQGQYRRQAKNGDEIWIEASYNPVFRF-GKPYKVVKIATD 121
           +DA      +   +LSR +             + IWI+A   P+    G+   VV +  D
Sbjct: 127 QDAKKGHPVSAELQLSRSQ-------------EAIWIKADLYPIKAINGQLQNVVVLLQD 173

Query: 122 ITVIKRKSAEDDGKLAALSRAQAMIEFTPDGKILGANENFLTTLDYTAEEIIGKHHSIFC 181
           IT  K +  +  G++ A++  QA+IEFT DG IL AN+NFL T+ Y  +EI G+HHS+F 
Sbjct: 174 ITAAKLEKIDRSGQMNAVNLTQAVIEFTLDGTILTANQNFLQTVGYQLDEIQGRHHSMFV 233

Query: 182 EPAYAQSQDYRDFWKELGRGHFSTGQFMRLGKDNKRVFIQASYNPIIDDRGRVFKVVKFA 241
           +  Y QSQ+Y+ FW+ L  G F   ++ R GK  K ++IQASYNPI+D  G+ +KVVK+A
Sbjct: 234 DEQYKQSQEYQHFWQRLRSGEFFVDEYKRFGKGGKEIWIQASYNPIMDSEGKPYKVVKYA 293

Query: 242 FDVTDRVHAVEELGAALERLSQCNIRVTLDKPFVGEFERLRQDFNKSIAEFQKTLENVLG 301
            +VT R   V E+   +  LS  ++   L  PF GEF  L +  ++ I   ++ + ++  
Sbjct: 294 TNVTQRKMVVNEVKRVMTALSSGDLSAQLTHPFEGEFAELGEVISQFIVTLRQIITDINS 353

Query: 302 QTGDLTRSSQEVSEASVNLAERSREQAVALEETSAALEEITATVRSSTENMKETRKLVQS 361
               +  ++ E+S  + +L+ R+ +QA  LE+T++++EE+ +TVR +++N  +   L   
Sbjct: 354 VAATIKLAATEISNGNTDLSSRTEQQASNLEQTASSMEELNSTVRQNSDNAMQANILAGK 413

Query: 362 ARASTVASTEVVERTVDAMQRIETASREISQIIGVIDEIAFQTNLLALNAGVEAARAGDA 421
           A     +  E++E+ V  M  I  ++++I+ IIGVID IAFQTN+LALNA VEAARAG+ 
Sbjct: 414 ATEIAASGGELIEQVVVTMASINESAQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQ 473

Query: 422 GKGFAVVAQEVRELAQRSASAAKEIKALINNSGTEVLEGVRLVGETGEALKQIDSLVRHI 481
           G+GF+VVA EVR LAQRSA+AAK+IKALI++S +++  G  LV  +G  +K I   ++ +
Sbjct: 474 GRGFSVVASEVRSLAQRSANAAKDIKALISDSVSKISNGNELVDRSGSTMKDIVVSIKRV 533

Query: 482 DGNVDTISKAADEQAAGISEINKAVNRLDRMTQENAAMSARTTVISTTLAQGADALAQLV 541
              +  I+ A+ EQA GI+E+N+AVN++D MTQ+NAA+       S +L   A+ L   V
Sbjct: 534 HDLMADIASASAEQATGINEVNQAVNQMDEMTQQNAALVEEAAAASESLLAQAEQLYDHV 593

Query: 542 SLFKL 546
           ++F+L
Sbjct: 594 AMFRL 598



 Score =  122 bits (305), Expect = 6e-32
 Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 1/142 (0%)

Query: 9   LDASAVLDALSRSQAIIEFDLTGKILKANDNFCKAVGYQPSEIVGRTHSIFLSSEDAASP 68
           +D S  ++A++ +QA+IEF L G IL AN NF + VGYQ  EI GR HS+F+  +   S 
Sbjct: 182 IDRSGQMNAVNLTQAVIEFTLDGTILTANQNFLQTVGYQLDEIQGRHHSMFVDEQYKQSQ 241

Query: 69  EYKAFWAKLSRGEYDQGQYRRQAKNGDEIWIEASYNPVF-RFGKPYKVVKIATDITVIKR 127
           EY+ FW +L  GE+   +Y+R  K G EIWI+ASYNP+    GKPYKVVK AT++T  K 
Sbjct: 242 EYQHFWQRLRSGEFFVDEYKRFGKGGKEIWIQASYNPIMDSEGKPYKVVKYATNVTQRKM 301

Query: 128 KSAEDDGKLAALSRAQAMIEFT 149
              E    + ALS      + T
Sbjct: 302 VVNEVKRVMTALSSGDLSAQLT 323