Pairwise Alignments

Query, 578 a.a., sensory methylation accepting chemotaxis protein from Agrobacterium fabrum C58

Subject, 432 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  207 bits (528), Expect = 5e-58
 Identities = 133/419 (31%), Positives = 207/419 (49%), Gaps = 40/419 (9%)

Query: 10  DASAVLDALSRSQAIIEFDLTGKILKANDNFCKAVGYQPSEIVGRTHSIFLSSEDAASPE 69
           +A AV+D++  S A IEF   G IL AN  F KAVGY   EIVG+ H +F +     + E
Sbjct: 19  EAEAVVDSIKASIATIEFTPDGIILDANPLFLKAVGYSLDEIVGKHHKLFCAEYYVNTSE 78

Query: 70  YKAFWAKLSRGEYDQGQYRRQAKNGDEIWIEASYNPVFRFGKPYKVVKIATDITVIKRKS 129
           Y+ FW +L +G+  +G++ R  KNG EIW+ A+Y P+   GK  K++K A  IT  K + 
Sbjct: 79  YQQFWRELKQGQAKEGKFPRVHKNGQEIWLRATYFPIKLDGKITKIMKTAAVITEDKYQL 138

Query: 130 AEDDGKLAALSRAQAMIEFTPDGKILGANENFLTTLDYTAEEIIGKHHSIFCEPAYAQSQ 189
                  +AL ++QA+IEF+P+G IL AN NFL T+ Y+ E++ GKHH +FC   +   Q
Sbjct: 139 DAQAALFSALQKSQAIIEFSPEGNILNANANFLRTMGYSKEQLQGKHHRLFCFDNF--YQ 196

Query: 190 DYRDFWKELGRGHFSTGQFMRLGKDNKRVFIQASYNPIIDDRGRVFKVVKFAFDVTDRV- 248
           D   FW +L RG +  G F R       ++++A YNP++DD G+V KV+KFA D+T R+ 
Sbjct: 197 DNPHFWDDLRRGQYKKGLFQRKNAYGDSIWLEAVYNPVMDDHGKVVKVIKFASDITQRII 256

Query: 249 --HAVEELGAALERLSQCNIRVTLDKPFVGEFERLRQDFNKSIAEFQKTLENVLGQTGDL 306
             HA+ +        SQ  +                +  N+ +                L
Sbjct: 257 KSHAIRDAANIAHATSQSTV----------------EQANRGV---------------QL 285

Query: 307 TRSSQEVSEASVNLAERSREQAVALEETSAALEEITATVRSSTE--NMKETRKLVQSARA 364
             ++   S A      ++ E  + L E S +++ I AT+ +  +  N+      +++ARA
Sbjct: 286 LDATVNTSNAIAAQTHKTTESMLKLNEQSQSIQAIVATISAIADQTNLLALNAAIEAARA 345

Query: 365 STVASTEVVERTVDAMQRIETASREISQIIGVIDEIAFQTNLLALNAGVEAARAGDAGK 423
                   V    +  Q     S+   +I  V+D+ + Q    A +   E  R  + GK
Sbjct: 346 GEQGRGFAVVAD-EVRQLAARTSKSTGEIAAVVDKNS-QLTASATSMMNEVERIAEEGK 402



 Score =  157 bits (397), Expect = 8e-43
 Identities = 111/425 (26%), Positives = 201/425 (47%), Gaps = 56/425 (13%)

Query: 121 DITVIKRKSAEDDGKLAALSRAQAMIEFTPDGKILGANENFLTTLDYTAEEIIGKHHSIF 180
           D+   + K  E +  + ++  + A IEFTPDG IL AN  FL  + Y+ +EI+GKHH +F
Sbjct: 9   DLAESETKRREAEAVVDSIKASIATIEFTPDGIILDANPLFLKAVGYSLDEIVGKHHKLF 68

Query: 181 CEPAYAQSQDYRDFWKELGRGHFSTGQFMRLGKDNKRVFIQASYNPIIDDRGRVFKVVKF 240
           C   Y  + +Y+ FW+EL +G    G+F R+ K+ + ++++A+Y PI  D G++ K++K 
Sbjct: 69  CAEYYVNTSEYQQFWRELKQGQAKEGKFPRVHKNGQEIWLRATYFPIKLD-GKITKIMKT 127

Query: 241 AFDVTDRVHAVEELGAALERLSQCNIRVTLD--------------------KPFVGEFER 280
           A  +T+  + ++   A    L +    +                       +   G+  R
Sbjct: 128 AAVITEDKYQLDAQAALFSALQKSQAIIEFSPEGNILNANANFLRTMGYSKEQLQGKHHR 187

Query: 281 L------------------RQDFNKSIAEFQKT------LENVLGQTGDLTRSSQEVSEA 316
           L                  R  + K + + +        LE V     D      +V + 
Sbjct: 188 LFCFDNFYQDNPHFWDDLRRGQYKKGLFQRKNAYGDSIWLEAVYNPVMDDHGKVVKVIKF 247

Query: 317 SVNLAERSREQAVALEETSAALEEITATVRSSTENMKETRKLVQSARASTVASTEVVERT 376
           + ++ +R  +     +  + A     +TV  +   ++     V ++ A    +     +T
Sbjct: 248 ASDITQRIIKSHAIRDAANIAHATSQSTVEQANRGVQLLDATVNTSNAIAAQT----HKT 303

Query: 377 VDAMQRIETASREISQIIGVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQEVRELA 436
            ++M ++   S+ I  I+  I  IA QTNLLALNA +EAARAG+ G+GFAVVA EVR+LA
Sbjct: 304 TESMLKLNEQSQSIQAIVATISAIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLA 363

Query: 437 QRSASAAKEIKALINN------SGTEVLEGVRLVGETG-EALKQIDSLVRHIDGNVDTIS 489
            R++ +  EI A+++       S T ++  V  + E G + L ++ +++  I    + ++
Sbjct: 364 ARTSKSTGEIAAVVDKNSQLTASATSMMNEVERIAEEGKQQLAEVTAVMGDIRTGAENVA 423

Query: 490 KAADE 494
           +   +
Sbjct: 424 ETVSQ 428