Pairwise Alignments

Query, 452 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

Subject, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  163 bits (413), Expect = 1e-44
 Identities = 124/440 (28%), Positives = 210/440 (47%), Gaps = 24/440 (5%)

Query: 30  HSS-IGLAVLLASFGGFGYWAGTAPLSSAIIAQGSFVATGNNKVVQHLEGGIIKEMMVSE 88
           HS+ I L V++A F     WA  A +    + QG  V +   +V+Q+LEGG++K+++V E
Sbjct: 48  HSARIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVRE 107

Query: 89  GDTVKVGDVLLTLDKTTALANERMFQLRRLRLETIVTRLRAEAQG--------EKSF--- 137
           G+ V+ G  L+ LD T   ++ R  + +   L   V +L A            EK++   
Sbjct: 108 GEQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDENFEEKNWANS 167

Query: 138 ------KVPDIVMKEASDPDIKSIIQSQNVVFHSKLVKLDEQLNLINKNIKSLEFRFAGY 191
                 K+    +   S PD+   ++ Q   +   L  L  QL+++++ IK  +      
Sbjct: 168 VQLDYSKLAFPPVLSDSQPDL---VERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDLIEA 224

Query: 192 DGQKQSFDRQLALLTQERDSKERLAKDGVIRKTDMLALERAIADAMGDIARLTGEMNQSE 251
           + +  +  +      +E D  E LA +GV+ K ++L L+R + D   ++     ++   +
Sbjct: 225 EARIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTSTELKIPVLK 284

Query: 252 AEIAKFKQEAVIAVNANKQAALDALEIAESDLDSVREQVRGAAEVLERTVIRSPVNGTVI 311
           + + +     + A    +    D L  A+  L S+ E   G  + + RTV+ SPV GTV 
Sbjct: 285 SAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVK 344

Query: 312 RAYYHTPGGVITTGKPIMEILPAHVPLILEAQVLRTSIDQLHEGQTAAIRLSALNRRTTP 371
             Y +T GGVI  G  I+EI+P    L++EAQ+    I  L     A ++ SA +     
Sbjct: 345 TLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTRYG 404

Query: 372 VLNGKVFYVSADSIEENAGLQVKDVYIVRVQISDEEIAKVHNFHPVPGMPADVLIQTSER 431
            L G + ++SAD+ ++  G      Y+VRV+  +  +    N   +PGM A V I T +R
Sbjct: 405 GLEGTLEHISADTTQDEEG---NSFYLVRVRTKETTLGHDQNLPIIPGMTASVDIITGKR 461

Query: 432 TFFEYLTKPIADSMSRAFKE 451
           T  +YL KPI  + S A +E
Sbjct: 462 TVLDYLLKPILSAQSNALRE 481