Pairwise Alignments

Query, 452 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

Subject, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 96.7 bits (239), Expect = 1e-24
 Identities = 95/416 (22%), Positives = 177/416 (42%), Gaps = 30/416 (7%)

Query: 48  WAGTAPLSSAIIAQGSFVATGNNKVVQHLEGGIIKEMMVSEGDTVKVGDVLLTLDKTTAL 107
           WA    L     A G  V +G ++V+Q  E   +  + V +G  V+ G  LLTLD     
Sbjct: 71  WAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQRVEKGAPLLTLDT---- 126

Query: 108 ANERMFQLRRLRLETIVTRL--RAEAQGEKSFKVPDIVMKE--ASDPDIKSIIQSQNVVF 163
                     L +   +TRL  +AE Q  +  +   ++  +    DP   ++   Q  + 
Sbjct: 127 ----------LGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTHDPMFTALPAEQQALI 176

Query: 164 HSKLV----KLDEQLNLINKNIKSLEFRFAGYDGQKQSFDRQLALLTQERDSKERLAKDG 219
           H   +    + D  L  I   +K      A       +  +    ++Q   ++++L +  
Sbjct: 177 HENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQRLAARKKLNQVK 236

Query: 220 VIRKTDMLALERAIADAMGDIARLTGEMNQSEAEIAKFKQEAVIAVNANKQAA-LDALEI 278
           VI   + L  E+ + +A   +A+   E+   +++     +E +    A KQ   L+    
Sbjct: 237 VIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESL-EERLTGFKAQKQREWLEKRRQ 295

Query: 279 AESDLDSVREQVRGAAEVLERTVIRSPVNGTVIRAYYHTPGGVITTGKPIMEILPAHVPL 338
           A   L S+ +++    E  +  +IRSPV+GTV +   +T G V+   + +M I+P +   
Sbjct: 296 ARLQLASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAVLQPAQNLMIIVPENRVQ 355

Query: 339 ILEAQVLRTSIDQLHEGQTAAIRLSALNRRTTPVLNGKVFYVSADS-IEENAGLQVKDVY 397
             E Q+L   +  ++ GQ+  +++ A        ++ ++  +S DS  +E  GL    V+
Sbjct: 356 QAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDSTTDEQLGL----VF 411

Query: 398 IVRVQISDEEI-AKVHNFHPVPGMPADVLIQTSERTFFEYLTKPIADSMSRAFKER 452
             ++Q+    I          PGM     I+T +R   +YL  PI +  + A +ER
Sbjct: 412 PAQIQLKTNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYLLSPIQEYQAEALRER 467