Pairwise Alignments

Query, 551 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  216 bits (550), Expect = 2e-60
 Identities = 159/557 (28%), Positives = 287/557 (51%), Gaps = 31/557 (5%)

Query: 4   VMLFTVAINILLLAIPLYLFQISDRVLTSRSMDTLVMLTVAVLGAVLLQAFMDAIRRFIL 63
           V++ ++ IN+  +A P++   + D+V+ + + +TL +L+  +L   L       +R + +
Sbjct: 157 VLIASLLINLFAVAAPMFSRIVYDKVVPNLAFETLWVLSSGILVIFLFDFVFKMLRSYFI 216

Query: 64  ----MRTAVELEVQLGAPILSAAARASLHGSGKDYQTLQDLQQLRSFLTSGTLIAFLDAP 119
                ++ + +  +L + ++     A     G   + LQ+ + +R F TS T+ + +D P
Sbjct: 217 DVAGKKSDILISSKLFSKVMGIRMEARPPSVGAFARHLQEFESIREFFTSATISSLIDLP 276

Query: 120 LMPLFIVVVYLVHPHLGIIIMVCCVVLFGIAWLNQRFTARQFSEASGYLSRANFHLDSMS 179
              LF+V+++L+  HL  + ++  ++L   ++L Q    R   E S   S+         
Sbjct: 277 FALLFLVLIWLMAGHLVWVPVIGVLILVIYSFLIQSRLKRAIEEGSRLASQ--------- 327

Query: 180 RNSQIINALAMIPEAVKMWGRETAGSLK-----SHVA---AQDRNIMFSGVSKAARMVTQ 231
           + + +I +LA + E VK++G +     +     +H+A    + R I  S +   A  V Q
Sbjct: 328 KYANLIESLAGL-ETVKLFGAQGQFQYRWEEAVAHMANWNIKSRRITDS-IQNTAGFVQQ 385

Query: 232 IALLGW---GAHLSLSGELTGGMVIAASIISGRALAPIEGAIEGWHQFNKSAASYGRIKQ 288
            A +G    G +L  +G+LT G +IAA+++SGRA+ P+        ++N++ +S   I+Q
Sbjct: 386 AANIGMIIVGVYLISNGDLTMGGLIAATMLSGRAIGPLVQLSLLSTRYNQAKSSMTIIEQ 445

Query: 289 LLINSPLNFPRLRL---PNPEGRLDVERILFVPPPQKKVILNGISFSLKKGESLAIIGNS 345
           ++          R    P  +G+++++R+ F  P      +  +S ++  GE +AIIG  
Sbjct: 446 VMSMPDEQEEGKRYIHRPIIQGKIELDRVTFHYPNSPIASVRDLSLTIHPGEKVAIIGRI 505

Query: 346 GSGKTTLGKMLVGSILPTSGNVRLDLMDLRNWDQRQFGESIGYLPQDVQLFPGTIKANIC 405
           GSGKTTL ++++G   PT G+VR+D  D+          +IG +PQD  LF G+I+ NI 
Sbjct: 506 GSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRDNIT 565

Query: 406 RMRDDVEDRQIYEAAVLADVHELIAGFPQGYETVVAADGAPLSGGQKQRIALARAFFGDP 465
             R   +DR++ +AA  A V       P G E  V   G  LSGGQ+Q +++ARAF G P
Sbjct: 566 LGRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVGEGGMLLSGGQRQSVSIARAFLGRP 625

Query: 466 KFVVLDEPNSNLDTAGEQALARALLHAKKQGITTVTITQRPALLQCVDKIMVLKDGSVAM 525
             +++DEP S +D   E  + + L   K    T + IT + ++L  VD+++V++ G +  
Sbjct: 626 PVLLMDEPTSAMDNRSEMHIKQQLSQLKPSE-TLILITHKTSMLDVVDRVIVMEKGCIIA 684

Query: 526 FGERMDVLKAL-SGNGR 541
            G + +VL  L  GN R
Sbjct: 685 DGPKHEVLNDLRQGNVR 701