Pairwise Alignments

Query, 551 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  221 bits (564), Expect = 6e-62
 Identities = 153/545 (28%), Positives = 274/545 (50%), Gaps = 26/545 (4%)

Query: 4   VMLFTVAINILLLAIPLYLFQISDRVLTSRSMDTLVMLTVAVLGAVLLQAFMDAIRRFIL 63
           ++LF+  + IL L  PL+   + D+VL  ++  TL +L   ++   +++  +  +R +  
Sbjct: 164 ILLFSFVLQILALISPLFFQVVMDKVLVHQAWSTLDVLVFGLVITGVIEVVLRGLREYQY 223

Query: 64  MRTAVELEVQLGAPILSAAARASL-----HGSGKDYQTLQDLQQLRSFLTSGTLIAFLDA 118
             TA  +++QLG  ++       L        G     +++L  +R FLT       ++ 
Sbjct: 224 AHTANRIDIQLGLKLVQHLFGLPLMFFKSRQVGAIVTRVRELDTIREFLTGSMFTLTVEL 283

Query: 119 PLMPLFIVVVYLVH-PHLGIIIM-VCCVVLFGIAWLNQRFTA---RQFSEASGYLSRANF 173
             M +F+ V+ L+  P  G+ I  V C VL    WL  R  A   +QFS A+   S    
Sbjct: 284 LFMFVFLYVMSLLSAPLTGLFIATVPCYVLLAW-WLTPRMQAAIEKQFSHAAANTS---- 338

Query: 174 HLDSMSRNSQIINALAMIPEAVKMWGRETAGSLKSHVAAQDRNIMFSGVSKAARMVTQIA 233
            L      S+ + +LA+ P  ++ W  +T   + +    Q  N   + + +  + +T +A
Sbjct: 339 FLTETVAGSETLKSLAVEPRFIRRWDEQTEKMVTTGYDVQQLNNRSNHLVQLLQKITSVA 398

Query: 234 LLGWGAHLSLSGELTGGMVIAASIISGRALAPIEGAIEGWHQFNKSAASYGRIKQLLINS 293
           +L  GA   LS E+T G +IA ++++     P+   +E W QF ++  +  ++  +L   
Sbjct: 399 ILWLGATEVLSLEMTIGQLIAFNMMTNHIAQPLARMVELWGQFIQTRVAIEKLGDML--- 455

Query: 294 PLNFPRLRLPNPE-----GRLDVERILFVPPPQKKVILNGISFSLKKGESLAIIGNSGSG 348
             N P  +    +     G +  + ILF   P     +N +S  ++ GE+L ++G SGSG
Sbjct: 456 --NLPVEQHTGSDNVTISGAISFKNILFRYQPDIPPTINDLSLDIRAGETLGVVGTSGSG 513

Query: 349 KTTLGKMLVGSILPTSGNVRLDLMDLRNWDQRQFGESIGYLPQDVQLFPGTIKANICRMR 408
           K+TL ++L+    P  G++ +D + L + + +Q  + +G + Q+  LF  ++  NI + +
Sbjct: 514 KSTLARLLLRLYSPEQGSITIDGIPLNHINVQQLRQRVGVVLQENFLFHKSVSENIAQSK 573

Query: 409 DDVEDRQIYEAAVLADVHELIAGFPQGYETVVAADGAPLSGGQKQRIALARAFFGDPKFV 468
            +    +I EAA L+  H+ I   P GY+TV+A  G  LSGGQ+QR+A+AR    DPK +
Sbjct: 574 PEASLEEIIEAAKLSGAHDFILKLPMGYDTVLAEGGQSLSGGQRQRLAIARTLLSDPKVL 633

Query: 469 VLDEPNSNLDTAGEQALARALLHAKKQGITTVTITQRPALLQCVDKIMVLKDGSVAMFGE 528
           +LDE  S LD    QA+ +A + +  +G T +TI  R + ++  D+I+VL  G++   G 
Sbjct: 634 ILDEATSALDDE-SQAVIQANMASIARGRTVITIAHRLSTVRDCDRIIVLHQGTIVEQGS 692

Query: 529 RMDVL 533
              +L
Sbjct: 693 HQQLL 697