Pairwise Alignments

Query, 551 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  198 bits (503), Expect = 7e-55
 Identities = 147/539 (27%), Positives = 247/539 (45%), Gaps = 12/539 (2%)

Query: 4   VMLFTVAINILLLAIPLYLFQISDRVLTSRSMDTLVMLTVAVLGAVLLQAFMDAIRRFIL 63
           V L+ +A+ I  L  P+    + D+VL  RS+ +L +L +A+L   + +     +R  + 
Sbjct: 170 VFLYAIALQIFALVSPMLFENVIDKVLVGRSLSSLHVLALAMLALAIAEPAYSYLRNTVF 229

Query: 64  MRTAVELEVQLGAPILSAAARASL-----HGSGKDYQTLQDLQQLRSFLTSGTLIAFLDA 118
              A ++  +L   +        L       +G+    ++++ Q+R FLT  TL+  LD 
Sbjct: 230 GHLASQVNAELSGRLYRHLVGLPLTYFKQRQTGQIIARVREMAQIRQFLTGSTLMLLLDL 289

Query: 119 PLMPLFIVVVYLVHPHLGIIIMVCCVVLFGIAWLNQRFTARQFSEASGYLSRANF--HLD 176
             + +F+ V++     L  +++   V+ F + WL      R+  E S Y S AN    L 
Sbjct: 290 IFVTVFLAVMFHYASTLTWLVIGSLVIYF-VLWLIAGPLIRKKVE-SEYESDANATTFLT 347

Query: 177 SMSRNSQIINALAMIPEAVKMWGRETAGSLKSHVAAQDRNIMFSGVSKAARMVTQIALLG 236
                 + I   A     ++ W R  +  L     AQ   ++        + +T   LL 
Sbjct: 348 EAVTGIETIKTTATEHRFLEQWQRILSQQLNRSFDAQKSGLIAGQAIALVQKLTAALLLW 407

Query: 237 WGAHLSLSGELTGGMVIAASIISGRALAPIEGAIEGWHQFNKSAASYGRIKQLLINSPLN 296
           WG    L GE+T G ++A ++++G    P+    + W  F  +  +  R+  +L     N
Sbjct: 408 WGVSAVLKGEITPGQLVAFNMLAGHVTQPVLRLAQIWQDFQHTLIALRRVGDILDEPREN 467

Query: 297 FPR--LRLPNPEGRLDVERILFVPPPQKKVILNGISFSLKKGESLAIIGNSGSGKTTLGK 354
             +    +P  +G ++   I F        +L  +S  +K G+ + + G SGSGK+TL +
Sbjct: 468 SKQGLASVPELDGGIEFSNIRFRYHQDAPEVLANLSLKIKPGQFIGVTGPSGSGKSTLTR 527

Query: 355 MLVGSILPTSGNVRLDLMDLRNWDQRQFGESIGYLPQDVQLFPGTIKANICRMRDDVEDR 414
           +L    +P  G V +D MDL   D      ++  + Q+  LF G++  NI   +    D 
Sbjct: 528 LLQRLYVPQHGQVLVDGMDLAIADPVSLRRNMSVVLQESILFSGSVADNIRLCKPQASDE 587

Query: 415 QIYEAAVLADVHELIAGFPQGYETVVAADGAPLSGGQKQRIALARAFFGDPKFVVLDEPN 474
           +I  AA LA     I G P G+   V   GA LSGGQ+QRIALARA   +P+ ++LDE  
Sbjct: 588 EIRHAAQLAGALAFIEGLPHGFNQPVGEKGAALSGGQRQRIALARALLVNPRILLLDEAT 647

Query: 475 SNLDTAGEQALARALLHAKKQGITTVTITQRPALLQCVDKIMVLKDGSVAMFGERMDVL 533
           S LD   E ++  + +    +G T ++I  R   ++  D I VL  G VA  G   ++L
Sbjct: 648 SALDYNSEASI-MSNMDEICRGRTVISIAHRLNTIRHADNIFVLDKGQVAESGTHEELL 705