Pairwise Alignments

Query, 308 a.a., sugar ABC transporter permease from Agrobacterium fabrum C58

Subject, 326 a.a., sugar ABC transporter permease from Rahnella sp. WP5

 Score =  205 bits (521), Expect = 1e-57
 Identities = 111/292 (38%), Positives = 178/292 (60%), Gaps = 13/292 (4%)

Query: 28  LAVLLLAPAAILLSLIIVYPVARLVYTSFFSLSLTSGLPAEFIGFENYTAMFD------- 80
           +A LL+AP+ +LL+ +  +P+ R ++ SF    L S     F+GF NY  + D       
Sbjct: 34  IAWLLVAPSLLLLAAVAGWPLFRTLFYSFTDAMLDSPDDYRFVGFTNYIDLADGAHYYGV 93

Query: 81  --DPIFWETTWNTVLITLITVPGALFMGLGLALLANLPFSMQWPMRLSLLIPWALPLSFA 138
             DP++W+   NT+  ++++V   L  G+ LALL N  F  Q  +R ++L+PWA+P   +
Sbjct: 94  LADPLWWKAVGNTLRFSVMSVSLELVFGMLLALLMNQKFRGQGLVRTAILVPWAIPTIVS 153

Query: 139 GLIFAWFFHYEYGVVNDVLNRLGF--EGIIWFNSPNWAFAAICLTIIWKTSSFMALMILA 196
             +++W FH +YGVVN++L RLG     + W   P  +  A+ +  +WKT+ FMALM+LA
Sbjct: 154 ARMWSWMFHDQYGVVNNLLLRLGVIHSPLAWVADPGLSMWAVVIVDVWKTTPFMALMLLA 213

Query: 197 GLQTIPRSLYEAADVDGAGKIRRFFEITLPLLKPSIVVALIFRTITALQTFDIPYMMTGG 256
            LQ IPR LYEAA +DGA   +RF  ITLPL+ P+++VALIFR + AL+ FD+ Y++T  
Sbjct: 214 ALQLIPRDLYEAARIDGANTWQRFRRITLPLIMPAMIVALIFRVMDALRVFDLIYILTSN 273

Query: 257 GPGTSTTTLAMYIHQNTVSFLDLGYGSALAVVMFALSMCVTAVYLRIIRTKD 308
               +T +++ Y     VS+ ++G GSA +V++F +   + A +L + R ++
Sbjct: 274 --SEATVSVSGYARDLLVSYQEMGSGSAASVLVFMMVAGIAACFLMLGRRRN 323