Pairwise Alignments

Query, 611 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 533 a.a., ABC transporter related (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  505 bits (1301), Expect = e-147
 Identities = 279/552 (50%), Positives = 359/552 (65%), Gaps = 29/552 (5%)

Query: 13  DAVLSVRNLTTSFHVDGGWKPVVRDISFDVGPGETVAIVGESGSGKSVTSLSIMRLLDRE 72
           DAVL VRNL   F  DG     V+ +SFDV  GETVA+VGESGSGKSVT+LS + LL  +
Sbjct: 3   DAVLQVRNLRVGFRQDGQVTEAVKGVSFDVAQGETVALVGESGSGKSVTALSTVSLLP-D 61

Query: 73  SSRVQGEILLGGRNLLSLSEDAMRRVRGNEVAMIFQEPMTSLNPLFTIGDQISEALLCHQ 132
           S+ V G I   G  ++   E  +RRVRGN+V+ IFQEPMTSLNPL  +  QI+E+L  HQ
Sbjct: 62  SAEVSGSITYAGTEMVGAPERDLRRVRGNDVSFIFQEPMTSLNPLHPLEKQITESLTLHQ 121

Query: 133 PMSKAEARAETVRLLEKVRIPSAASRFDEYPHRFSGGMRQRVMIAMALASKPKLLIADEP 192
            ++   ARA  + LLEKV I  A SR   YPH+ SGG RQRVMIAMALA+ P LLIADEP
Sbjct: 122 GLTGDAARARVIELLEKVGIRDAESRLGAYPHQLSGGQRQRVMIAMALANGPDLLIADEP 181

Query: 193 TTALDVTIQGQILDLIKTLQEEEGTSVLFITHDMGVVAEIADRTVVMYRGEQVEVGATAD 252
           TTALDVTIQ QILDL+  L+E EG S+LFITHD+ +V  IADR  VM  GE VE G TA+
Sbjct: 182 TTALDVTIQAQILDLLADLKEAEGMSLLFITHDLTIVRRIADRVCVMQGGEIVETGPTAE 241

Query: 253 IFHRGKHPYTRALLSAVPVLGSMKGEERPLRFPIVNTATGETQEPVRPADTVDASAQPVL 312
           IF   +HPYTR LL+A                           EP    D V   A  V 
Sbjct: 242 IFANPQHPYTRKLLAA---------------------------EPSGQPDPVPEDAPVVA 274

Query: 313 KVEGLTKRFDIHSGLLGRLSGRVHAVENVSFDLRAGETLSLVGESGCGKSTTGRAIMRLI 372
           + + L   F I  G+L R  G V AV N + ++RAGETL +VGESG GK+T   AI+RLI
Sbjct: 275 ETDSLKVWFPIQRGILRRTVGHVKAVNNATLNVRAGETLGVVGESGSGKTTLALAILRLI 334

Query: 373 EPDAGSVVVNGENILTLDKSGMREMRKTVQMIFQDPFASLNPRMTVGAAIAEPFLEHRMG 432
             + G +V  GENI       +R +RK +Q++FQDP+ SL+PRMT+   IAE    H + 
Sbjct: 335 SSE-GRIVYAGENIQGWKSRDLRRLRKDMQVVFQDPYGSLSPRMTIAQIIAEGLGVHGLE 393

Query: 433 SAREAKEVVADMLNKVGLSPDMAARYPHEFSGGQRQRICIARALALQPKVIVADESVSAL 492
              + + +VA++L +VGL P M  RYPHEFSGGQRQRI IARA+ L+PK++V DE  SAL
Sbjct: 394 PGADPRRMVAEILVEVGLDPAMMDRYPHEFSGGQRQRIAIARAMILRPKLVVLDEPTSAL 453

Query: 493 DVSIKAQVINLMLDLQQSLDLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRADVFDN 552
           D++++ Q++ L+  LQ+   LA++FISHD+ VV  +SH+V VM  G++VE+G    +F+ 
Sbjct: 454 DMTVQVQIVELLRALQRKYGLAYIFISHDLKVVRALSHKVIVMRQGDVVEMGEGRQIFER 513

Query: 553 PQHDYTRKLMAA 564
           P+ DYT++L+AA
Sbjct: 514 PRSDYTKQLLAA 525



 Score =  198 bits (503), Expect = 6e-55
 Identities = 115/265 (43%), Positives = 164/265 (61%), Gaps = 9/265 (3%)

Query: 330 RLSGRV-HAVENVSFDLRAGETLSLVGESGCGKSTTGRAIMRLIEPDA---GSVVVNGEN 385
           R  G+V  AV+ VSFD+  GET++LVGESG GKS T  + + L+   A   GS+   G  
Sbjct: 16  RQDGQVTEAVKGVSFDVAQGETVALVGESGSGKSVTALSTVSLLPDSAEVSGSITYAGTE 75

Query: 386 ILTLDKSGMREMR-KTVQMIFQDPFASLNPRMTVGAAIAEPFLEHRMGSAREAKEVVADM 444
           ++   +  +R +R   V  IFQ+P  SLNP   +   I E    H+  +   A+  V ++
Sbjct: 76  MVGAPERDLRRVRGNDVSFIFQEPMTSLNPLHPLEKQITESLTLHQGLTGDAARARVIEL 135

Query: 445 LNKVGL--SPDMAARYPHEFSGGQRQRICIARALALQPKVIVADESVSALDVSIKAQVIN 502
           L KVG+  +      YPH+ SGGQRQR+ IA ALA  P +++ADE  +ALDV+I+AQ+++
Sbjct: 136 LEKVGIRDAESRLGAYPHQLSGGQRQRVMIAMALANGPDLLIADEPTTALDVTIQAQILD 195

Query: 503 LMLDLQQSLDLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRADVFDNPQHDYTRKLM 562
           L+ DL+++  ++ LFI+HD+ +V R++ RV VM  GEIVE GP A++F NPQH YTRKL+
Sbjct: 196 LLADLKEAEGMSLLFITHDLTIVRRIADRVCVMQGGEIVETGPTAEIFANPQHPYTRKLL 255

Query: 563 AAVP--VPDPDRRNTRRGAANDELK 585
           AA P   PDP   +    A  D LK
Sbjct: 256 AAEPSGQPDPVPEDAPVVAETDSLK 280