Pairwise Alignments

Query, 324 a.a., ABC transporter substrate binding protein from Agrobacterium fabrum C58

Subject, 326 a.a., TRAP dicarboxylate transporter, DctP subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  126 bits (316), Expect = 8e-34
 Identities = 93/303 (30%), Positives = 149/303 (49%), Gaps = 20/303 (6%)

Query: 4   RLSTLMGATAAILLSALAAQAETTLK-------WAHVYETSEPFHTDSVWAAEEIAKRTD 56
           RL+ +  A+A ++ +A AA+A   +        +AHV+              + +     
Sbjct: 5   RLALIAAASAMLMPAAAAAEAVMQINSSLPEGSFAHVFLQEYE---------QRLEAAAP 55

Query: 57  GRYKVDVFPASQLGKEADINQGLKIGTVDIIISGSSFAARDFKPIGVTYFPYIFRDPSHL 116
           G   V +F ++ LGKE D+ QGL  GT    +S S+ A  + +   +   PY+F D + +
Sbjct: 56  GEIDVQIFMSNTLGKEEDVLQGLGFGTHQASLSASAVAQVNNRT-SIFDLPYLFEDRAAV 114

Query: 117 IAYTKSDIFKRLAKGYEDKTGNHIAAVSYYGTRHTTSN-KPIAACADMAGLKMRVPDVPA 175
             +  S   + LA G+ D TG  +AA+   G R  T+N +PI   AD+ GLK+R P    
Sbjct: 115 QTFIDSPAGEMLADGF-DVTGMVLAAMWDNGFRQITNNVRPIVTPADLDGLKIRTPTNRQ 173

Query: 176 YLAMPRACGANTTPIAFAEVYLALQNGTVDAQENPLTTIEAKKFFEVQKNIVLTGHIVDH 235
            + M    GAN TP++F EVY AL  GT+D QENP   +E  K FEVQ  + LT H+   
Sbjct: 174 RVEMFNTLGANATPLSFGEVYSALDQGTIDGQENPANVVETAKLFEVQGYMSLTNHVYLP 233

Query: 236 LNTVVSKNLWSKLSDEDKKIFTDVMQEAAERTTKTIEGREKSLVEDFKKRGLNVAEVDKA 295
              V+ +   + L+ E ++    V +E    + +  E  +   +   +++ L V E+D A
Sbjct: 234 TFFVIGEPFLNSLTPELRETVISVAKEVGPWSFEWGEKSDTETIAALQEK-LEVNEIDFA 292

Query: 296 DFE 298
            F+
Sbjct: 293 AFQ 295