Pairwise Alignments

Query, 326 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  168 bits (425), Expect = 2e-46
 Identities = 108/300 (36%), Positives = 162/300 (54%), Gaps = 12/300 (4%)

Query: 15  IFVIAYLLCVLQY--PAILSTRVIGNLLTDNAFLGIAAVGMTFVILSGGIDLSIGSVIAF 72
           +  + +L+ V+ +  P   +   + N+L   +   I AVGMT VIL+ GIDLS+GSV+A 
Sbjct: 35  LIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLAL 94

Query: 73  TSVFVAVMVGTYNIHPLLAFAIVLVVSTLFGCLMGAMIRFLSIPPFVVTLAGMFLARGAA 132
              F A +V    +  L+A    L+     G + G +I    +  F+ TL  M L RG  
Sbjct: 95  CGAFAATLVAM-EVPVLVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMTLLRGVT 153

Query: 133 YLISTQSVPISHPFIDEIQGFYFRFPGGGRLTALAM---LMLIVFAAGMLIASRTRFGAN 189
            ++ T   PIS  F D    F +   G G    + +   LM++VFA    + + TRFG  
Sbjct: 154 -MVYTDGRPISTGFTDTADTFAWF--GTGYTLGIPVPVWLMVVVFAGAWYLLNHTRFGRY 210

Query: 190 VYALGGNPQSAELMGVPIGRTTIGIYALSGFLSGLAGIVYTLYTSSGYSLATVGVELDAI 249
           VYA+GGN  +  L G+ + R  IG+YA+ G L+ LAGI+ T   SS    A +G ELDAI
Sbjct: 211 VYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYELDAI 270

Query: 250 AAVVIGGTLLTGGTGLVAGTFVGLLIQGLIQTYI-VFDGTLSSWWTKIVIGVLLFVFIVL 308
           AAVV+GGT L GG G + GT +G LI G +   + + D  +SS++  I   V++ + +++
Sbjct: 271 AAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLD--VSSYYQMIAKAVVILLAVLV 328