Pairwise Alignments

Query, 267 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  172 bits (435), Expect = 2e-47
 Identities = 104/280 (37%), Positives = 148/280 (52%), Gaps = 18/280 (6%)

Query: 1   MSGNALCRIDDLSVRYAAADA--PALRKASLTIRQGQRLAIIGESGSGKSTLGKAIAGLL 58
           MS N L ++ +LSV +   D    A++  S  IR G+ LAI+GESGSGKS    A+  LL
Sbjct: 1   MSPNPLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLL 60

Query: 59  PARAQVSGDISWSRDSGLFTG-----------RPMPGRDIGTIFQDTGATLNPVLTIGEQ 107
           P  A++  +      S +F G           R + G  IG IFQ+   +LNP + +G Q
Sbjct: 61  PKNARIHPE-----SSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQ 115

Query: 108 VAEGAVRHLGLSWRQGRDLARDLLERVRLPHPSHLLSAYPHQLSGGQRQRVAIAAAIAAR 167
           VAE    H  +S  Q +    +L + V LP P      +PH+ SGGQ QR+ IA A+   
Sbjct: 116 VAEAIRCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINE 175

Query: 168 PAILIADEATSALDTVTQAAIAALLDGLVREEETTLVFITHDIGLASSLADDIAVLSAGE 227
           P ILIADE T+ALD   QA +  L+  +       ++FITHD+G+   +AD + V+  G+
Sbjct: 176 PDILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGD 235

Query: 228 LVEHGPARRVLSAPTHPYTRTLLADYLDLSTPPLISEAAP 267
           +VE G   ++   P H YTR L+      S  P+  +AAP
Sbjct: 236 VVEQGSTEQLFLQPEHDYTRMLINSIPKGSKDPVAVDAAP 275



 Score =  159 bits (403), Expect = 9e-44
 Identities = 90/237 (37%), Positives = 140/237 (59%), Gaps = 8/237 (3%)

Query: 23  ALRKASLTIRQGQRLAIIGESGSGKSTLGKAIAGLLPARAQVSGDISWSRDSGLFTGRPM 82
           A++  SL ++QG+ L I+GESGSGKSTLG+A+ GLLP+  Q++      +D    + +  
Sbjct: 302 AVKGISLELKQGETLGIVGESGSGKSTLGRALIGLLPSTGQIAFK---GQDFRALSEKQR 358

Query: 83  PG--RDIGTIFQDTGATLNPVLTIGEQVAEGAVRHLG-LSWRQGRDLARDLLERVRLPHP 139
               +DI  +FQD   +L+P +T+GE + EG + H   +S  +    AR  LE VRL   
Sbjct: 359 LALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRALEEVRLDPN 418

Query: 140 SHLLSAYPHQLSGGQRQRVAIAAAIAARPAILIADEATSALDTVTQAAIAALLDGLVREE 199
           S  ++ YPH+ SGGQRQR+AIA A+   P+ ++ DE TSALD   Q  +  LL  + +  
Sbjct: 419 S--INRYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRR 476

Query: 200 ETTLVFITHDIGLASSLADDIAVLSAGELVEHGPARRVLSAPTHPYTRTLLADYLDL 256
               +FI+HD+ +  +L+D + V+  G+++E G A  +   P H YT+ L+A   D+
Sbjct: 477 NIGYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAASFDI 533