Pairwise Alignments

Query, 276 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  148 bits (373), Expect = 2e-40
 Identities = 97/286 (33%), Positives = 154/286 (53%), Gaps = 28/286 (9%)

Query: 2   NFALRLLRSFEGVTGFIILALLVVTALAAPLAFPGDPLAIIGEPLIAPFTDAALP----- 56
           +F    LR    ++ F +  L V+ A++APL  P +P  +    ++    DA LP     
Sbjct: 18  DFLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIM----DAELPPSWME 73

Query: 57  -------LGTDRLGRNVLAELAHGAQASLLVGMGAAAAALVIGTVIGTIAGFAGGLVDEA 109
                  LGTD  GR++ + + +G++ SL +G  A    L +G VIG  AG+ GG +D  
Sbjct: 74  GGNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSF 133

Query: 110 LMRVTDA--------FQIVPNFLLALAFVSTIGPSMPIVILAIALGA--WADPARLMRAQ 159
           LMR  D           I+ + +   +F         +V+L + +G   W   AR +RA 
Sbjct: 134 LMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRAS 193

Query: 160 VLSIRERDYVQSARAIGMHPLEIAFRQILPNALPPVLALAAIIVAAAILTEAALSFLGLG 219
           VL+ ++++YV++AR +G     I FR ILPN L P+L ++ + VA AI++EAALSFLGLG
Sbjct: 194 VLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLG 253

Query: 220 DP-NIVTWGSMIAEGRNVLRSAA-FLSVIPGIGLLVTVLGVYLFGE 263
            P +  + GS+I+ G   + S A +++  PGI L++ VL + L G+
Sbjct: 254 LPVDQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGD 299