Pairwise Alignments

Query, 525 a.a., diguanylate cyclase from Agrobacterium fabrum C58

Subject, 490 a.a., GGDEF family protein from Acidovorax sp. GW101-3H11

 Score =  520 bits (1340), Expect = e-152
 Identities = 252/465 (54%), Positives = 339/465 (72%)

Query: 32  NVFNLAPVAMWIEDFSEVKSQFDIWRAEGIEDIRAFLLEDLSRVAACSQKIRVIEVNAKT 91
           ++F LAPV++W+EDFSE+K  FD WRA+G+ DIR+ L ED +R+  CS  +RV++VN +T
Sbjct: 13  HMFELAPVSLWLEDFSELKRLFDGWRAQGVTDIRSHLAEDPARLRQCSASLRVLQVNRRT 72

Query: 92  LELFEARDQAHLVDNLHRIFRDDMLESHVNELSELWAGRTEFTSNAVNYSIGGRRLDIQL 151
           LELF A  Q HL  NL ++FRDD  ++  +EL++LW G+ EF +  VNY++ GRRLD+ +
Sbjct: 73  LELFSADSQQHLEANLDKVFRDDRHDTAAHELAQLWDGQMEFANQTVNYALDGRRLDVLV 132

Query: 152 RGTVIPGHEDTLGRLLLTTEDVTEREEARRKELLNRRYAEGMFKHSPVSLWVEDFSRVRR 211
           R  ++PGHE    R+L++ ED T++ EA R+   + +YA  +F+HSPVSLWVEDFS V+ 
Sbjct: 133 RARILPGHEADWSRVLVSLEDNTQQLEAARRLRRSEQYARDLFEHSPVSLWVEDFSVVKN 192

Query: 212 LIEEVRERGIVDFRVFMDVHPEFVRQCMSEIRVIDVNQATLDLFCAADRQVLLQRLGDIF 271
           L++ VR +GI DF+ F+ VHP+FV +CM EIRVIDVNQ TL +F AA +++LL  +G +F
Sbjct: 193 LLDGVRAQGIGDFKTFLKVHPDFVARCMQEIRVIDVNQQTLRMFGAASKEMLLNSIGRVF 252

Query: 272 RGEMEKPFREQLIELWNGNLTHHREVVNYALDGSERHVLLHFSVFPGHERDWSLVQVALT 331
           RGEM + F EQL +LW G     REVVNY+L G   ++ + FSV   H  DW LV ++L 
Sbjct: 253 RGEMHESFAEQLQDLWEGKTFQQREVVNYSLSGDAVNIHMQFSVLDSHRHDWGLVLLSLV 312

Query: 332 DITARKKAEAYLEYLGKHDVLTKLHNRAFYSDELNRLERSALRPVSAIVIDLNGLKEAND 391
           DITARKKAEAYLEYLGKHDVLT+L NRAFY++ELNRL R    P+S I IDLNGLK  ND
Sbjct: 313 DITARKKAEAYLEYLGKHDVLTQLRNRAFYAEELNRLTRKGPWPLSIIAIDLNGLKVVND 372

Query: 392 KLGHDAGDALLRRVGEVLNGVVTAPNHAARIGGDEFAILLPGADKQVAAAMVDTVYELLK 451
           + GH AGD++LRRVGEVL   V AP  AARIGGDEF +LLPG D++ A A+ + +  +L+
Sbjct: 373 EQGHAAGDSMLRRVGEVLAKAVDAPACAARIGGDEFTVLLPGTDERGAHALQERIISMLE 432

Query: 452 INNQFYSSAPLSLSLGVATTEAGETMESLVRRADMNMYEQKNAYY 496
           +NNQFY    LSL++G+A+  +GE +E+ + RAD  MY +KN YY
Sbjct: 433 LNNQFYPGQHLSLAMGIASCHSGEAVEAAINRADQAMYAEKNRYY 477



 Score =  124 bits (312), Expect = 6e-33
 Identities = 65/166 (39%), Positives = 96/166 (57%), Gaps = 7/166 (4%)

Query: 191 EGMFKHSPVSLWVEDFSRVRRLIEEVRERGIVDFRVFMDVHPEFVRQCMSEIRVIDVNQA 250
           E MF+ +PVSLW+EDFS ++RL +  R +G+ D R  +   P  +RQC + +RV+ VN+ 
Sbjct: 12  EHMFELAPVSLWLEDFSELKRLFDGWRAQGVTDIRSHLAEDPARLRQCSASLRVLQVNRR 71

Query: 251 TLDLFCAADRQVLLQRLGDIFRGEMEKPFREQLIELWNGNLTHHREVVNYALDGSERHVL 310
           TL+LF A  +Q L   L  +FR +       +L +LW+G +    + VNYALDG    VL
Sbjct: 72  TLELFSADSQQHLEANLDKVFRDDRHDTAAHELAQLWDGQMEFANQTVNYALDGRRLDVL 131

Query: 311 LHFSVFPGHERDWSLVQVALTDITAR-------KKAEAYLEYLGKH 349
           +   + PGHE DWS V V+L D T +       +++E Y   L +H
Sbjct: 132 VRARILPGHEADWSRVLVSLEDNTQQLEAARRLRRSEQYARDLFEH 177



 Score =  121 bits (303), Expect = 7e-32
 Identities = 68/197 (34%), Positives = 112/197 (56%), Gaps = 13/197 (6%)

Query: 21  KNARMTETIDTNVFNLAPVAMWIEDFSEVKSQFDIWRAEGIEDIRAFLLEDLSRVAACSQ 80
           +  R +E    ++F  +PV++W+EDFS VK+  D  RA+GI D + FL      VA C Q
Sbjct: 162 RRLRRSEQYARDLFEHSPVSLWVEDFSVVKNLLDGVRAQGIGDFKTFLKVHPDFVARCMQ 221

Query: 81  KIRVIEVNAKTLELFEARDQAHLVDNLHRIFRDDMLESHVNELSELWAGRTEFTSNAVNY 140
           +IRVI+VN +TL +F A  +  L++++ R+FR +M ES   +L +LW G+T      VNY
Sbjct: 222 EIRVIDVNQQTLRMFGAASKEMLLNSIGRVFRGEMHESFAEQLQDLWEGKTFQQREVVNY 281

Query: 141 SIGGRRLDIQLRGTVIPGHEDTLGRLLLTTEDVTEREEARRKELLNRRYAEGMFKHSPV- 199
           S+ G  ++I ++ +V+  H    G +LL+  D+T R++A         Y E + KH  + 
Sbjct: 282 SLSGDAVNIHMQFSVLDSHRHDWGLVLLSLVDITARKKA-------EAYLEYLGKHDVLT 334

Query: 200 -----SLWVEDFSRVRR 211
                + + E+ +R+ R
Sbjct: 335 QLRNRAFYAEELNRLTR 351