Pairwise Alignments

Query, 1044 a.a., RND multidrug efflux transporter from Agrobacterium fabrum C58

Subject, 1036 a.a., multidrug efflux RND transporter permease subunit from Pseudomonas fluorescens SBW25-INTG

 Score = 1102 bits (2851), Expect = 0.0
 Identities = 565/1023 (55%), Positives = 747/1023 (73%), Gaps = 6/1023 (0%)

Query: 1    MARFFIDRPIFAWVVAIFIMLAGLLAIPMLPIAQYPNVAPPQISIGTNYPGASPEDIYQS 60
            M  FFI+RP FAWV+A+FI+LAG L +  LP++QYP+VAPPQIS+  +YPGAS + I  +
Sbjct: 1    MVDFFIERPNFAWVIALFIVLAGALTLGRLPVSQYPDVAPPQISVSASYPGASAQIINLN 60

Query: 61   VTRPIEEELNGVPGLIYFESTSESSGRISINVTFEPGTNIGEAQVEVQNRIARVEPRLPR 120
            VT  +EEELNG+P L+Y+ESTS ++G     VTF+PGT+   AQ++VQNR+ RV  RLP+
Sbjct: 61   VTSLLEEELNGLPDLLYYESTS-ANGSADTTVTFKPGTDPDRAQIDVQNRLQRVVGRLPQ 119

Query: 121  SVTQQGLRVEQAGTSFLMMVALTSVDGNTDAIGLGDYLSRNVLGELRRVPGVGSAQLFAT 180
            +V +QGL+VEQ   +FLM+ AL+  D   D++GL D+ +R V  E+RRV GVG  +++  
Sbjct: 120  AVIEQGLKVEQVRANFLMIYALSYTDEQQDSVGLADFAARAVNNEIRRVAGVGRVEMYTA 179

Query: 181  QRSMRIWMDPDKMLGLSLTSDDVINAIQAQNSQVAAGRIGASPNPVGQQISATVNVQGQL 240
            +R+MRIW+DP +++G  L+  DV  AI AQN QV AG +G  P PV QQI+ATV VQGQL
Sbjct: 180  ERAMRIWVDPAELVGYGLSMADVSKAIAAQNVQVPAGSMGERPGPVDQQITATVMVQGQL 239

Query: 241  TSPEEFGSIVLRANPDGSSVRLRDVARVEVGGESYNFSSRLNGKPSAAIGVQLSPTANAM 300
             S E FG+IVLRAN DG+SVR+ DVARVE+G + Y F +RLNGKP AA+ VQL+P  NA+
Sbjct: 240  ESVEAFGNIVLRANDDGASVRIHDVARVELGRQDYRFDARLNGKPVAAMSVQLAPGGNAL 299

Query: 301  QTSEGVRATMEELSRYFPQGIEYEIPYDTSPFVKISIEKVIHTLIEAMILVFVVMFVFLQ 360
            QT++ V+A +E LS   P  +   +PYDT+PFV+ +I++V++TLIEAM+LVF+VM++FLQ
Sbjct: 300  QTAQAVKARLEHLSSTLPGNMRLSVPYDTAPFVQAAIKQVVYTLIEAMVLVFLVMWLFLQ 359

Query: 361  NIRYTIIPTLVVPVALLGTCAVMYVSGFSINVLTMFAMVLAIGILVDDAIVVVENVERIM 420
             +RYT+IP +VVPV L GT AVM V GFSIN++T+F MVLAIG+LVDDAIVVVE+VER++
Sbjct: 360  KLRYTLIPAVVVPVCLSGTLAVMGVLGFSINMMTLFGMVLAIGMLVDDAIVVVESVERLI 419

Query: 421  AEEHLSPKEATRKAMGQISGAIIGITLVLTAVFVPMAFFPGAVGIIYQQFSLTMVVSILF 480
            ++E LSPK+ATRKAM QISGAI+GITLVL  VF+P+AF  G+VG+IYQQF+L + VSILF
Sbjct: 420  SQERLSPKDATRKAMRQISGAIVGITLVLATVFLPLAFMGGSVGVIYQQFALVLSVSILF 479

Query: 481  SGFLALSLTPALCASFLKPIKAGHHEKKGFFGWFNRNFDKASHKYSSSVGGIIKRSGRFM 540
            SGFLAL+LTPALCA+ LKP              FNR+FD+ +  Y    G  ++R  R +
Sbjct: 480  SGFLALTLTPALCAALLKPFDPTRRVPG-----FNRHFDRLTAHYERVAGTWVRRGTRSV 534

Query: 541  IIYAALLAGLGWAYMQLPSSFLPNEDQGYLIVDIQAPAEASTERTLQSIQQIEKIFMEEP 600
             +Y  LLA L  AY +LPSSF+P+EDQGY + DIQ P  AS  RT  ++   E+  + +P
Sbjct: 535  CLYLLLLAVLVLAYHRLPSSFIPSEDQGYTVTDIQLPPAASAARTEVTVNAWEQYALAQP 594

Query: 601  AVERVIAISGFSFSGSGQNAGLAFATLKDWSERGPEDSAAAISARINGKLWGLPDAMSFA 660
            A  +V++I GFSFSG G NA L++ +LKDWS RG + ++ A++ R       + D   F+
Sbjct: 595  ATHQVLSILGFSFSGEGANAALSYISLKDWSVRGSDQASRAVAQRATRAFEDVSDGSVFS 654

Query: 661  LSPPPIQGLGNSSGFTFRLQDRSGAGQTALSAAGAQLMAAARQSPVLAGLRIEGMPDAAQ 720
              PP + GLG S+GF  RLQD +G     L  A AQL+AAA+ SPV+  LR EG+ DA Q
Sbjct: 655  TVPPAVDGLGTSAGFELRLQDLTGHPHAELLGARAQLLAAAKASPVIGSLRDEGLADAPQ 714

Query: 721  VNLIIDREKANTFGVTFSDINATISANMGSSYVNDFPNAGRMQRVTVQAEQGQRMKTEDL 780
            + + IDREKA   GV+F  I+A +SA +GS  +N+F N GRMQRV VQA+   R   E L
Sbjct: 715  IKIDIDREKAEALGVSFDVISAALSAALGSQQINEFANQGRMQRVIVQADGSSRQTPEAL 774

Query: 781  LNLNVRNANGGMVPVSSFATVEWVRGPSQVVGYNGYPAIRVSGQSAPGYSSGDAIAEMER 840
            L L V N    +VP+ +F+  EW  GP Q+V YNG  ++R +G +A GYS+G A+  ++ 
Sbjct: 775  LRLQVPNRQNKLVPLEAFSRFEWQVGPLQIVRYNGSQSLRFTGDAAAGYSTGQAMQALQD 834

Query: 841  LARELPGGFGFEWTGQSLQEIQSGSQAPALIGLSVLFVFLLLAALYESWSIPLSVMLVVP 900
            +A +LP GF  EW G SLQE QS +Q P L+GLS+L V L+L ALYESW+IP +V+L+VP
Sbjct: 835  IAAQLPAGFSLEWAGLSLQEQQSSAQVPLLMGLSLLTVLLVLVALYESWAIPFAVLLIVP 894

Query: 901  LGVIGSVAAVMLRGMPNDVYFLVGLVAIIGLSAKNAILIIEFAKDLRAEGKSTYDATVEA 960
            +GV+GSVAAV + GMPNDVYF VGLV IIGLSAKNAILI+EFAK L A+G S  +A ++A
Sbjct: 895  VGVLGSVAAVTVMGMPNDVYFKVGLVTIIGLSAKNAILIVEFAKALHAQGASLANAAIQA 954

Query: 961  AHLRFRPILMTSLAFSLGVLPMAIASGASAASQNAIGTGVLGGMISATILAIFFVPVFFV 1020
            A LRFRPI+MTSLAF LGV+P+A+A+G  AASQ AIGTGV+GGM++AT+L + +VPV FV
Sbjct: 955  ARLRFRPIIMTSLAFILGVVPLALATGPGAASQQAIGTGVIGGMLAATVLGVLWVPVLFV 1014

Query: 1021 FVM 1023
             VM
Sbjct: 1015 KVM 1017



 Score = 69.3 bits (168), Expect = 1e-15
 Identities = 82/371 (22%), Positives = 155/371 (41%), Gaps = 23/371 (6%)

Query: 675  FTFRLQDRSGAGQTALSAAGAQLMAAARQSPVLAGLRIEGMPDAAQVNLIIDREKANTFG 734
            +T   QD  G    A  A   ++   A         R+E       + + +D  +   +G
Sbjct: 143  YTDEQQDSVGLADFAARAVNNEIRRVAGVG------RVEMYTAERAMRIWVDPAELVGYG 196

Query: 735  VTFSDINATISAN---MGSSYVNDFPNAGRMQRVTVQAEQGQRMKTEDLLNLNVR-NANG 790
            ++ +D++  I+A    + +  + + P     Q       QGQ    E   N+ +R N +G
Sbjct: 197  LSMADVSKAIAAQNVQVPAGSMGERPGPVDQQITATVMVQGQLESVEAFGNIVLRANDDG 256

Query: 791  GMVPVSSFATVEWVRGPSQV-VGYNGYPAIRVSGQSAPGYSSGDAI-------AEMERLA 842
              V +   A VE  R   +     NG P   +S Q APG   G+A+       A +E L+
Sbjct: 257  ASVRIHDVARVELGRQDYRFDARLNGKPVAAMSVQLAPG---GNALQTAQAVKARLEHLS 313

Query: 843  RELPGGFGFEWTGQSLQEIQSG-SQAPALIGLSVLFVFLLLAALYESWSIPLSVMLVVPL 901
              LPG         +   +Q+   Q    +  +++ VFL++    +     L   +VVP+
Sbjct: 314  STLPGNMRLSVPYDTAPFVQAAIKQVVYTLIEAMVLVFLVMWLFLQKLRYTLIPAVVVPV 373

Query: 902  GVIGSVAAVMLRGMPNDVYFLVGLVAIIGLSAKNAILIIEFAKDLRAEGK-STYDATVEA 960
             + G++A + + G   ++  L G+V  IG+   +AI+++E  + L ++ + S  DAT +A
Sbjct: 374  CLSGTLAVMGVLGFSINMMTLFGMVLAIGMLVDDAIVVVESVERLISQERLSPKDATRKA 433

Query: 961  AHLRFRPILMTSLAFSLGVLPMAIASGASAASQNAIGTGVLGGMISATILAIFFVPVFFV 1020
                   I+  +L  +   LP+A   G+           +   ++ +  LA+   P    
Sbjct: 434  MRQISGAIVGITLVLATVFLPLAFMGGSVGVIYQQFALVLSVSILFSGFLALTLTPALCA 493

Query: 1021 FVMKFFGDRKK 1031
             ++K F   ++
Sbjct: 494  ALLKPFDPTRR 504