Pairwise Alignments

Query, 228 a.a., outer membrane protein from Agrobacterium fabrum C58

Subject, 213 a.a., outer membrane protein W (RefSeq) from Shewanella amazonensis SB2B

 Score =  100 bits (248), Expect = 3e-26
 Identities = 68/214 (31%), Positives = 108/214 (50%), Gaps = 11/214 (5%)

Query: 20  VNGALAADLAPLATAPTAEQAIAAASPWMLRVRGLGVITNDSGSVDGLPGAGLSYSDTVI 79
           ++G +AA L  + +A         A   ++R   + V  N+S  V     A    S+   
Sbjct: 6   LSGLIAASLLSVVSASAFAHQ---AGDIIVRAGAVVVAPNESSPVVA-DVAEFGVSNNTQ 61

Query: 80  PELDISYFFTDNFAAELILGTTYAKINGEGVLAGTPVGKTWLLPPTLTLQYHFTDFG-AF 138
             L+  Y  TDN+A EL+  T +      GVL    + +T  LPPTL  QY+F +   AF
Sbjct: 62  LGLNFGYMLTDNWAIELLAATPFTHDVSLGVLG--KIAETKHLPPTLVAQYYFGNANSAF 119

Query: 139 KPYIGAGVNYSLFYNQ---SEKPG-FSNLDVKNKLGAAVQVGFDYMLDEHWGVNFDVKKI 194
           +PY+G GVNY+ F++    ++  G  ++L +   +G A QVGFDY  +++W +N  V   
Sbjct: 120 RPYVGVGVNYTNFFDTEFTNDLDGALTDLSLSTSVGWAAQVGFDYSFNKNWMLNASVWYA 179

Query: 195 FLKTDWTAELGGTPISGKAKLDPWLIGAGITYRF 228
            + TD    LG TP+  +  +DPW+    + Y+F
Sbjct: 180 DISTDVKFNLGDTPVVVETDIDPWVYMVSVGYKF 213