Pairwise Alignments

Query, 228 a.a., outer membrane protein from Agrobacterium fabrum C58

Subject, 245 a.a., membrane protein from Herbaspirillum seropedicae SmR1

 Score = 58.9 bits (141), Expect = 8e-14
 Identities = 64/230 (27%), Positives = 100/230 (43%), Gaps = 23/230 (10%)

Query: 4   MNRKTALLASVAAMMMVNGALAADLAPLATAPTAEQAIAAASPWMLRVRGLGV-ITNDSG 62
           M ++ + L  +AA+ +    +AA  AP+  A TA   I     + L+ +     +T  +G
Sbjct: 1   MQKQFSFLPKIAALSV----MAAFAAPVM-AQTAGSNIVNVGWFHLQPQDSSSGLTKLNG 55

Query: 63  SVDGL-PGAGLSYSDTVIPELDISYFFTDNFAAELILGTTYA-KINGEGVLAGT-PVGKT 119
              G  P +  + S+     +  ++FFTDNFA    LG     K+ G G L     +GK 
Sbjct: 56  PQAGFFPNSTSTVSNADTLGIAFTHFFTDNFAVTADLGIPPEFKLKGTGDLQALGELGKA 115

Query: 120 WLLPPTLTLQYHFTDF-GAFKPYIGAGVNYSLFYNQSEKPGFSNLDVKNKLGAA------ 172
               P +  +++F     AF+P++GAGV Y  + + S    F N    N  G A      
Sbjct: 116 KQWSPAIVAKWYFGGAQDAFRPFVGAGVTYVWYSDVSLSQAFQNRASLNSGGTATANLSS 175

Query: 173 -----VQVGFDYMLDEHWGVNFDVKKIFLKTDWTAELGGTPISGKAKLDP 217
                +  G  Y  ++ W  +F V  I LKTD  A++   P    A L P
Sbjct: 176 SWAPVLTGGATYAFNDRWSASFSVSYIPLKTD--ADITANPAGAFAGLGP 223