Pairwise Alignments

Query, 286 a.a., sugar ABC transporter permease from Agrobacterium fabrum C58

Subject, 300 a.a., sugar ABC transporter permease from Rahnella sp. WP5

 Score =  133 bits (334), Expect = 5e-36
 Identities = 89/284 (31%), Positives = 148/284 (52%), Gaps = 9/284 (3%)

Query: 1   MPSRN-RIAYAFLAPYLLIFATFWVWPIISSFMLSFQNTRINPWRFAP----SMNWGRLV 55
           +P R  R A+  LAP LL+      WP+  +  LSF +  +     AP    S N+   +
Sbjct: 4   LPQREKRQAWLLLAPMLLMMFLLTAWPLARTLWLSFTDAGLIGDGSAPNWVGSENFIYAL 63

Query: 56  SDPAFYNALYNTLIILVIQVPVMIALATVMAVLLNSPLLKVRPLYRFAFFAPVVVGEVAY 115
           +DP F  AL+ TL   V+ V +   +  ++A+LLN P    R   R     P  +  +  
Sbjct: 64  TDPDFRAALWRTLYFTVVSVVIEGIIGVLVALLLNQPFWG-RSALRVLVILPWALPTIVN 122

Query: 116 AAVFRLMFSADFGIINKLITSVGLSPI--SWFDNANAAMALVIIAVTWRWAGYNAIIILA 173
           A ++RL F+ D+G IN L++ +GL     SW  + ++A+  V+ A  W+      +++LA
Sbjct: 123 ATLWRLNFNPDYGSINALLSQLGLIDAYRSWLGDPSSAINAVMFADIWKNYPLITLLVLA 182

Query: 174 GLQSIPGDVYEAATLDKVSKRQQFFHITLPLLKPIILFCVVLSVIGTMQLFAEPFLITNR 233
            LQ+IP D++EAA LD  S  ++F  ITLP +   +   +VL  I   ++F   +++T R
Sbjct: 183 ALQTIPEDLFEAARLDGASAFRRFRKITLPAIAAPLAVALVLRTIDAFKIFDIIYVMT-R 241

Query: 234 GGPGGGTETLGLFLYRQGFTSLNFGYASAIAYTMAALAIAISLL 277
           GGP   T+T+  F+Y++ F+ L  G  +A A  M  +   + ++
Sbjct: 242 GGPLDSTKTVSFFVYQESFSYLRAGSGAAYAILMTLICALLIMI 285